RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZSWIM4Q9H7M6 989 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 METTL14Q9HCE5 456 aaKnown RBP23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 PICK1Q9NRD5 415 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 FZD1Q9UP38 647 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 P4HBP07237 508 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-208ENST00000492980 EPB41P11171 864 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-208ENST00000492980 ZSCAN20P17040 1043 aaPredicted RBP23.19■■□□□ 1.3
CCDC88B-208ENST00000492980 RNF207Q6ZRF8 634 aa23.19■■□□□ 1.3
CCDC88B-208ENST00000492980 ZNF720Q7Z2F6 126 aa23.19■■□□□ 1.3
CCDC88B-208ENST00000492980 TRAPPC11Q7Z392 1133 aa23.19■■□□□ 1.3
CCDC88B-208ENST00000492980 IKZF4Q9H2S9 585 aa23.19■■□□□ 1.3
CCDC88B-208ENST00000492980 XRCC5P13010 732 aaKnown RBP23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 MAPK7Q13164 816 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 DPY19L2P1Q6NXN4 242 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 FAM178BQ8IXR5 827 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 NLGN2Q8NFZ4 835 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 PXMP2Q9NR77 195 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 ARGLU1Q9NWB6 273 aaPredicted RBP23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 ATP1A1P05023 1023 aaKnown RBP23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 REPS2Q8NFH8 660 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 C12orf42Q96LP6 360 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 RMDN3Q96TC7 470 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 PDCD2LQ9BRP1 358 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 RIPK3Q9Y572 518 aa23.18■■□□□ 1.3
CCDC88B-208ENST00000492980 ENC1O14682 589 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 USO1O60763 962 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 HIP1RO75146 1068 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 SERPING1P05155 500 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 SLC9C1Q4G0N8 1177 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 ODR4Q5SWX8 454 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 PAPD7Q5XG87 772 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 NSMFQ6X4W1 530 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 KSR1Q8IVT5 923 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 DAW1Q8N136 415 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 SECISBP2LQ93073 1101 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 BORCS6Q96GS4 357 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 RNF146Q9NTX7 359 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 TBC1D22BQ9NU19 505 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 OGFRQ9NZT2 677 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 ZHX2Q9Y6X8 837 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 MACROD2A1Z1Q3 448 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 MYCLP12524 364 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 DCAF17Q5H9S7 520 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 PADI6Q6TGC4 694 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 STXBP4Q6ZWJ1 553 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 SLC35C1Q96A29 364 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 PLCB1Q9NQ66 1216 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 HDAC6Q9UBN7 1215 aa23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 DBR1Q9UK59 544 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-208ENST00000492980 RBAK-RBAKDNI3L0D1 243 aa23.16■■□□□ 1.3
CCDC88B-208ENST00000492980 HMGCS2P54868 508 aa23.16■■□□□ 1.3
CCDC88B-208ENST00000492980 GFPT1Q06210 699 aaPredicted RBP23.16■■□□□ 1.3
CCDC88B-208ENST00000492980 TDRD12Q587J7 1177 aaKnown RBP23.16■■□□□ 1.3
CCDC88B-208ENST00000492980 GPRC5DQ9NZD1 345 aa23.16■■□□□ 1.3
CCDC88B-208ENST00000492980 SSC5DA1L4H1 1573 aa23.16■■□□□ 1.3
CCDC88B-208ENST00000492980 ACTN1P12814 892 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 SLC9A1P19634 815 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 CBX1P83916 185 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 COG2Q14746 738 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 STRA6Q9BX79 667 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 GGA3Q9NZ52 723 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 AIPL1Q9NZN9 384 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 SAMM50Q9Y512 469 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 PCDHB13Q9Y5F0 798 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 PPP1R37O75864 691 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 LYPLA2O95372 231 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 PON1P27169 355 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 MAGEA1P43355 309 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 QARSP47897 775 aaKnown RBP23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 RAPGEF1Q13905 1077 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 EXOC3L4Q17RC7 722 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 ARHGEF16Q5VV41 709 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 PARD6BQ9BYG5 372 aa23.15■■□□□ 1.3
CCDC88B-208ENST00000492980 ANO9A1A5B4 782 aa23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 PJA2O43164 708 aa23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 DSG3P32926 999 aa23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 RARRES1P49788 294 aa23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 BAATQ14032 418 aaPredicted RBP23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 TCERG1LQ5VWI1 586 aa23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 KLRG1Q96E93 195 aa23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 ADAMTS5Q9UNA0 930 aa23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 SAR1BQ9Y6B6 198 aa23.14■■□□□ 1.3
CCDC88B-208ENST00000492980 CTAGE15A4D2H0 777 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 ATP9AO75110 1047 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 CTAGE8P0CG41 777 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 PSMC2P35998 433 aaKnown RBP23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 OAZ1P54368 228 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 KLHDC7AQ5VTJ3 777 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 SNRNP48Q6IEG0 339 aaKnown RBP23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 CTAGE6Q86UF2 777 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 CTAGE4Q8IX94 777 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 FAM186BQ8IYM0 893 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 MKNK1Q9BUB5 465 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 MLXIPQ9HAP2 919 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 AGPAT3Q9NRZ7 376 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 DMAC2Q9NW81 257 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 FAM53CQ9NYF3 392 aa23.14■■□□□ 1.29
CCDC88B-208ENST00000492980 C19orf81C9J6K1 198 aa23.13■■□□□ 1.29
CCDC88B-208ENST00000492980 TUBB4BP68371 445 aa23.13■■□□□ 1.29
CCDC88B-208ENST00000492980 ASIC2Q16515 512 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms