RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ST6GALNAC4Q9H4F1 302 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 AGO4Q9HCK5 861 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 LZTFL1Q9NQ48 299 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 DMAC2Q9NW81 257 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 RNF186Q9NXI6 227 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 RGL1Q9NZL6 768 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 AIPL1Q9NZN9 384 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 COL20A1Q9P218 1284 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.83□□□□□ -0.52
USP4-214ENST00000491791 POLR2AP24928 1970 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 ASTN1O14525 1302 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 PHIPQ8WWQ0 1821 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 PES1O00541 588 aaKnown RBP11.82□□□□□ -0.52
USP4-214ENST00000491791 TGFB1I1O43294 461 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 PPP1R37O75864 691 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 IPO7O95373 1038 aaKnown RBP11.82□□□□□ -0.52
USP4-214ENST00000491791 TUBBP07437 444 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 VCAM1P19320 739 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 NR2F2P24468 414 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 CASP5P51878 434 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 NAA30Q147X3 362 aaPredicted RBP11.82□□□□□ -0.52
USP4-214ENST00000491791 ERCC6LQ2NKX8 1250 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 CCDC40Q4G0X9 1142 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 ZNF569Q5MCW4 686 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 HGSNATQ68CP4 663 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 STXBP4Q6ZWJ1 553 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 ZNF720Q7Z2F6 126 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 C12orf56Q8IXR9 622 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 SLC35F6Q8N357 371 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 ZNF280CQ8ND82 737 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 MNS1Q8NEH6 495 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 NEK11Q8NG66 645 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 GOLGA5Q8TBA6 731 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 CARD6Q9BX69 1037 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 IRX2Q9BZI1 471 aaPredicted RBP11.82□□□□□ -0.52
USP4-214ENST00000491791 PARVGQ9HBI0 331 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 KCNH7Q9NS40 1196 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 ARHGAP20Q9P2F6 1191 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.82□□□□□ -0.52
USP4-214ENST00000491791 LOC285556D6RIA3 1793 aa11.82□□□□□ -0.52
USP4-214ENST00000491791 A0A0U1RQJ8 604 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 POTEB2H3BUK9 544 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 VWA5AO00534 786 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 NFIBO00712 420 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 EPHB6O15197 1021 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 PRLRP16471 622 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 PTPRAP18433 802 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 SFNP31947 248 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 NF2P35240 595 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 MRPS9P82933 396 aaKnown RBP11.81□□□□□ -0.52
USP4-214ENST00000491791 ELF2Q15723 593 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 SH3D19Q5HYK7 790 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 NBPF12Q5TAG4 269 aaPredicted RBP11.81□□□□□ -0.52
USP4-214ENST00000491791 TPH2Q8IWU9 490 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 C4orf19Q8IY42 314 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 SLC17A8Q8NDX2 589 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 ATRIPQ8WXE1 791 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 KCNN1Q92952 543 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 EEF2KMTQ96G04 330 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 ZSWIM4Q9H7M6 989 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 MMRN2Q9H8L6 949 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 ARMCX3Q9UH62 379 aaPredicted RBP11.81□□□□□ -0.52
USP4-214ENST00000491791 DDX41Q9UJV9 622 aaKnown RBP11.81□□□□□ -0.52
USP4-214ENST00000491791 PCDHB13Q9Y5F0 798 aa11.81□□□□□ -0.52
USP4-214ENST00000491791 ZMYM2Q9UBW7 1377 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 ZNF263O14978 683 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 MAPK13O15264 365 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 STAM2O75886 525 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 FLOT1O75955 427 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 FAM13AO94988 1023 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 AFPP02771 609 aaKnown RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 NR3C1P04150 777 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 SERPING1P05155 500 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 MYBP10242 640 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 JAK3P52333 1124 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 CYP4A11Q02928 519 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 KCNH2Q12809 1159 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 MAPK7Q13164 816 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 ITGB3BPQ13352 177 aaPredicted RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 TTLL12Q14166 644 aaPredicted RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 CTTNQ14247 550 aaKnown RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 SPA17Q15506 151 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 ZYXQ15942 572 aaKnown RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 CCDC122Q5T0U0 273 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 FBXO38Q6PIJ6 1188 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 TRAPPC11Q7Z392 1133 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 CTU1Q7Z7A3 348 aaKnown RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 RASAL3Q86YV0 1011 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 NELFCDQ8IXH7 590 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 RNF10Q8N5U6 811 aaKnown RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 MSANTD4Q8NCY6 345 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 LRRN4CLQ8ND94 238 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 JAKMIP2Q96AA8 810 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 GPRASP2Q96D09 838 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 RPGRIP1Q96KN7 1286 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 CCDC42Q96M95 316 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 PCMTD1Q96MG8 357 aaPredicted RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 PDCD2LQ9BRP1 358 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 LXNQ9BS40 222 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 GANQ9H2C0 597 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms