RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TMPRSS5Q9H3S3 457 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.1□□□□□ -1.91
HMGB1-208ENST00000490788 UCKL1Q9NWZ5 548 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 GALNT8Q9NY28 637 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 PLAAQ9Y263 795 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 LTBP4Q8N2S1 1624 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 PRAMEF22A3QJZ6 481 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 MAFGO15525 162 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 KPNA6O60684 536 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 CUTAO60888 179 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 GLRX3O76003 335 aaKnown RBP3.09□□□□□ -1.91
HMGB1-208ENST00000490788 C4BPAP04003 597 aaKnown RBP3.09□□□□□ -1.91
HMGB1-208ENST00000490788 CYP17A1P05093 508 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 MMEP08473 750 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 CELA3BP08861 270 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 SDSP20132 328 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 AOAHP28039 575 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 OCRLQ01968 901 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 PLP2Q04941 152 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 MAP3K12Q12852 859 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 ZNF460Q14592 562 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 PRR31Q5SQ13 230 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 ABHD17CQ6PCB6 329 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 ARHGEF18Q6ZSZ5 1173 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 RALYLQ86SE5 291 aaKnown RBP3.09□□□□□ -1.91
HMGB1-208ENST00000490788 JAZF1Q86VZ6 243 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 NME9Q86XW9 330 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 NOSTRINQ8IVI9 506 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 DHX37Q8IY37 1157 aaKnown RBP3.09□□□□□ -1.91
HMGB1-208ENST00000490788 KBTBD2Q8IY47 623 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 PPM1KQ8N3J5 372 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 MFSD3Q96ES6 412 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 YTHDC1Q96MU7 727 aaKnown RBP3.09□□□□□ -1.91
HMGB1-208ENST00000490788 BDH2Q9BUT1 245 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 ACSS2Q9NR19 701 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 KCND1Q9NSA2 647 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 FBXO10Q9UK96 956 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 ASB1Q9Y576 335 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 B3GALT1Q9Y5Z6 326 aa3.09□□□□□ -1.91
HMGB1-208ENST00000490788 TLDC2A0PJX2 215 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 K7ESM1 405 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 LAMTOR5O43504 91 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 B4GALT4O60513 344 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 KNG1P01042 644 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 HMGCRP04035 888 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 KCNA6P17658 529 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 POLD1P28340 1107 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 SDHAP31040 664 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 ECE1P42892 770 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 MEOX1P50221 254 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 SCNN1BP51168 640 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 ROM1Q03395 351 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 USP10Q14694 798 aaKnown RBP3.08□□□□□ -1.92
HMGB1-208ENST00000490788 RTP5Q14D33 572 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 ZFYVE27Q5T4F4 411 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 TIGD7Q6NT04 549 aaPredicted RBP3.08□□□□□ -1.92
HMGB1-208ENST00000490788 CC2D1AQ6P1N0 951 aaPredicted RBP3.08□□□□□ -1.92
HMGB1-208ENST00000490788 GLB1LQ6UWU2 654 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 Q6ZUG5 572 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 CXXC5Q7LFL8 322 aaKnown RBP3.08□□□□□ -1.92
HMGB1-208ENST00000490788 OTOP1Q7RTM1 612 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 C11orf74Q86VG3 221 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 LRRTM3Q86VH5 581 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 REXO1L1PQ8IX06 675 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 ZZZ3Q8IYH5 903 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 RTKN2Q8IZC4 609 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 KIAA1958Q8N8K9 716 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 NUDT10Q8NFP7 164 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 ASB15Q8WXK1 588 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 ZCCHC14Q8WYQ9 949 aaKnown RBP3.08□□□□□ -1.92
HMGB1-208ENST00000490788 NUDT11Q96G61 164 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 BTBD2Q9BX70 525 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 CARD11Q9BXL7 1154 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 TOMM22Q9NS69 142 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 B4GALT6Q9UBX8 382 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 WASF3Q9UPY6 502 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 INVSQ9Y283 1065 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 MAPKBP1O60336 1514 aa3.08□□□□□ -1.92
HMGB1-208ENST00000490788 UBA6A0AVT1 1052 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-208ENST00000490788 NPEPPSL1A6NEC2 478 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 CBX4O00257 560 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 ENPP3O14638 875 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 RAB11FIP3O75154 756 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 IL18BPO95998 194 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 PLATP00750 562 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 APEX1P27695 318 aaKnown RBP3.07□□□□□ -1.92
HMGB1-208ENST00000490788 MC4RP32245 332 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 ADCY8P40145 1251 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 FNTBP49356 437 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 KCNQ1P51787 676 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 KPNA1P52294 538 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-208ENST00000490788 RRADP55042 308 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 IL2P60568 153 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 PPP2CBP62714 309 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 PPP2CAP67775 309 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 ADCY1Q08828 1119 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 TKFCQ3LXA3 575 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 ZMAT1Q5H9K5 638 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 CT47A1Q5JQC4 288 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-208ENST00000490788 PRAMEF9Q5VWM5 478 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms