RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CC2D2BQ6DHV5 1058 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 ERICH1Q86X53 443 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 TRAIPQ9BWF2 469 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 KIF28PB7ZC32 967 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 EEF1B2P24534 225 aaKnown RBP18.91■□□□□ 0.62
NPHP4-209ENST00000489180 FOXD4Q12950 439 aaPredicted RBP18.91■□□□□ 0.62
NPHP4-209ENST00000489180 PFKFB3Q16875 520 aaPredicted RBP18.91■□□□□ 0.62
NPHP4-209ENST00000489180 PIGBQ92521 554 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 EXT2Q93063 718 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 OSBPL9Q96SU4 736 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 GRAMD1BQ3KR37 738 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 OSBPL5Q9H0X9 879 aaPredicted RBP18.91■□□□□ 0.62
NPHP4-209ENST00000489180 LY9Q9HBG7 655 aa18.91■□□□□ 0.62
NPHP4-209ENST00000489180 CNOT8Q9UFF9 292 aaKnown RBP18.91■□□□□ 0.62
NPHP4-209ENST00000489180 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.91■□□□□ 0.62
NPHP4-209ENST00000489180 GOLGA8CPA6NN73 597 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 RASA4BC9J798 803 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 RASA4O43374 803 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 RAD17O75943 681 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 PSAPP07602 524 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 CACNB3P54284 484 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 KRT80Q6KB66 452 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 LCA5Q86VQ0 697 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 SYNE4Q8N205 404 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 MARCH10Q8NA82 808 aaPredicted RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 RAD54LQ92698 747 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 ABCF3Q9NUQ8 709 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 PI4KBQ9UBF8 816 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 CDK12Q9NYV4 1490 aaPredicted RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 XPOTO43592 962 aaKnown RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 KITP10721 976 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 GCLMP48507 274 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 INPP1P49441 399 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 TRMT10CQ7L0Y3 403 aaKnown RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 ZNF579Q8NAF0 562 aaKnown RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 ZFYVE16Q7Z3T8 1539 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 NR3C1P04150 777 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 SYT2Q8N9I0 419 aaPredicted RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 FGD4Q96M96 766 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 NVLO15381 856 aaKnown RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 ARHGAP27Q6ZUM4 889 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 KCNV2Q8TDN2 545 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 CCDC138Q96M89 665 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 LRRC4Q9HBW1 653 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 ADGRG1Q9Y653 693 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 TMPRSS15P98073 1019 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 COASYQ13057 564 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 ATG16L1Q676U5 607 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 SRRM1Q8IYB3 904 aaKnown RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 BRIP1Q9BX63 1249 aa18.9■□□□□ 0.62
NPHP4-209ENST00000489180 PPARGC1AQ9UBK2 798 aaKnown RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 TTC7AQ9ULT0 858 aaPredicted RBP18.9■□□□□ 0.62
NPHP4-209ENST00000489180 PODXLO00592 558 aa18.89■□□□□ 0.62
NPHP4-209ENST00000489180 USP14P54578 494 aa18.89■□□□□ 0.62
NPHP4-209ENST00000489180 ARPP19P56211 112 aa18.89■□□□□ 0.62
NPHP4-209ENST00000489180 ESRRGP62508 458 aa18.89■□□□□ 0.62
NPHP4-209ENST00000489180 PDXDC2PQ6P474 469 aa18.89■□□□□ 0.62
NPHP4-209ENST00000489180 MB21D2Q8IYB1 491 aaPredicted RBP18.89■□□□□ 0.62
NPHP4-209ENST00000489180 DDX47Q9H0S4 455 aaKnown RBP18.89■□□□□ 0.62
NPHP4-209ENST00000489180 KRT82Q9NSB4 513 aa18.89■□□□□ 0.62
NPHP4-209ENST00000489180 PCDHA6Q9UN73 950 aa18.89■□□□□ 0.62
NPHP4-209ENST00000489180 PCDHA8Q9Y5H6 950 aa18.89■□□□□ 0.62
NPHP4-209ENST00000489180 ERBB3P21860 1342 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 EIF4E1BA6NMX2 242 aaKnown RBP18.89■□□□□ 0.61
NPHP4-209ENST00000489180 KCNH2Q12809 1159 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 TMED1Q13445 227 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 MTF1Q14872 753 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 PPP1R2P3Q6NXS1 205 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 ZBBXA8MT70 800 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L15C9J2P7 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L13C9JLJ4 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L11C9JVI0 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L18D6R9N7 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L22D6RA61 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L17D6RBQ6 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L19D6RCP7 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L20D6RJB6 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 PI4K2BG5E9Z4 385 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L24Q0WX57 530 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 SPARCL1Q14515 664 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 PPP6R3Q5H9R7 873 aaPredicted RBP18.89■□□□□ 0.61
NPHP4-209ENST00000489180 USP17L6PQ6QN14 398 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 SIX6OS1Q8N1H7 587 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 NUDCD1Q96RS6 583 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 ZNF233A6NK53 670 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 NLGN1Q8N2Q7 840 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 ENAHQ8N8S7 591 aaPredicted RBP18.89■□□□□ 0.61
NPHP4-209ENST00000489180 NLRP4Q96MN2 994 aa18.89■□□□□ 0.61
NPHP4-209ENST00000489180 TTC26A0AVF1 554 aa18.88■□□□□ 0.61
NPHP4-209ENST00000489180 ERVV-1B6SEH8 477 aa18.88■□□□□ 0.61
NPHP4-209ENST00000489180 ATP1A1P05023 1023 aaKnown RBP18.88■□□□□ 0.61
NPHP4-209ENST00000489180 PMS2P54278 862 aa18.88■□□□□ 0.61
NPHP4-209ENST00000489180 DGKHQ86XP1 1220 aa18.88■□□□□ 0.61
NPHP4-209ENST00000489180 TMEM47Q9BQJ4 181 aa18.88■□□□□ 0.61
NPHP4-209ENST00000489180 EFHD1Q9BUP0 239 aa18.88■□□□□ 0.61
NPHP4-209ENST00000489180 DHX36Q9H2U1 1008 aaKnown RBP18.88■□□□□ 0.61
NPHP4-209ENST00000489180 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.88■□□□□ 0.619e-7■■■■■ 44.3
NPHP4-209ENST00000489180 TJP3O95049 919 aa18.88■□□□□ 0.61
NPHP4-209ENST00000489180 NOP9Q86U38 636 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms