RNA–Protein interactions for RNA: ENST00000481786.1

USH2A-204, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-204ENST00000481786 CHAMP1Q96JM3 812 aa3.35□□□□□ -1.87
USH2A-204ENST00000481786 YTHDC1Q96MU7 727 aaKnown RBP3.35□□□□□ -1.87
USH2A-204ENST00000481786 AGAP2Q99490 1192 aa3.35□□□□□ -1.87
USH2A-204ENST00000481786 EPB41L1Q9H4G0 881 aa3.35□□□□□ -1.87
USH2A-204ENST00000481786 PPARGC1AQ9UBK2 798 aaKnown RBP3.35□□□□□ -1.87
USH2A-204ENST00000481786 PFDN2Q9UHV9 154 aa3.35□□□□□ -1.87
USH2A-204ENST00000481786 ZNF652Q9Y2D9 606 aa3.35□□□□□ -1.87
USH2A-204ENST00000481786 COA3Q9Y2R0 106 aaPredicted RBP3.35□□□□□ -1.87
USH2A-204ENST00000481786 AFF2P51816 1311 aa3.35□□□□□ -1.87
USH2A-204ENST00000481786 POLR1AO95602 1720 aaPredicted RBP3.35□□□□□ -1.87
USH2A-204ENST00000481786 NUP153P49790 1475 aaKnown RBP3.35□□□□□ -1.87
USH2A-204ENST00000481786 EP400Q96L91 3159 aa3.35□□□□□ -1.87
USH2A-204ENST00000481786 ABCC1P33527 1531 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 NWD1Q149M9 1564 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 ROBO1Q9Y6N7 1651 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 CEP350Q5VT06 3117 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 SUPT6HQ7KZ85 1726 aaKnown RBP3.34□□□□□ -1.87
USH2A-204ENST00000481786 TCRBV5S2A0A599 114 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 C9orf118A6NHY6 69 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 DGKIO75912 1065 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 FAM153BP0C7A2 387 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 IL13P35225 146 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 ATXN1P54253 815 aaKnown RBP3.34□□□□□ -1.87
USH2A-204ENST00000481786 GPR85P60893 370 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 SSRP1Q08945 709 aaKnown RBP3.34□□□□□ -1.87
USH2A-204ENST00000481786 SF3A1Q15459 793 aaKnown RBP3.34□□□□□ -1.87
USH2A-204ENST00000481786 CHRNA2Q15822 529 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 LRCH2Q5VUJ6 765 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 STEAP3Q658P3 488 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 SLFN13Q68D06 897 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 DPY19L2P1Q6NXN4 242 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 LRP10Q7Z4F1 713 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 LDLRAD3Q86YD5 345 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 SCUBE1Q8IWY4 988 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 FAM126BQ8IXS8 530 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 TTLL6Q8N841 843 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 ZBTB38Q8NAP3 1195 aaPredicted RBP3.34□□□□□ -1.87
USH2A-204ENST00000481786 ZG16BQ96DA0 208 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 DEPDC7Q96QD5 511 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 CRAMP1Q96RY5 1269 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 ADOQ96SZ5 270 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 ZFYVE21Q9BQ24 234 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 JAM3Q9BX67 310 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 SNTG2Q9NY99 539 aa3.34□□□□□ -1.87
USH2A-204ENST00000481786 FAM135AQ9P2D6 1515 aa3.34□□□□□ -1.88
USH2A-204ENST00000481786 ABCA6Q8N139 1617 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 TRBV23-1A0A0A0MS06 115 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 C1SP09871 688 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 PURAQ00577 322 aaKnown RBP3.33□□□□□ -1.88
USH2A-204ENST00000481786 PTH1RQ03431 593 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 PRKD1Q15139 912 aaPredicted RBP3.33□□□□□ -1.88
USH2A-204ENST00000481786 CSRP2Q16527 193 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 LONRF2Q1L5Z9 754 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 CR1LQ2VPA4 569 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 LSM12Q3MHD2 195 aaKnown RBP3.33□□□□□ -1.88
USH2A-204ENST00000481786 FAM209AQ5JX71 171 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 SOGA3Q5TF21 947 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 TCTN3Q6NUS6 607 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 IFNL3Q8IZI9 196 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 AMER2Q8N7J2 671 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 ARRDC4Q8NCT1 418 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.33□□□□□ -1.88
USH2A-204ENST00000481786 ZCCHC14Q8WYQ9 949 aaKnown RBP3.33□□□□□ -1.88
USH2A-204ENST00000481786 MKL1Q969V6 931 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 EXOC2Q96KP1 924 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 TMEM168Q9H0V1 697 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 SEMA4AQ9H3S1 761 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 SMOC1Q9H4F8 434 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 SLC6A20Q9NP91 592 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 ZDHHC9Q9Y397 364 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 PCDHB4Q9Y5E5 795 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 TMEM94Q12767 1356 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 TNRQ92752 1358 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 BLMP54132 1417 aaPredicted RBP3.33□□□□□ -1.88
USH2A-204ENST00000481786 NLRP1Q9C000 1473 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 IQGAP1P46940 1657 aa3.33□□□□□ -1.88
USH2A-204ENST00000481786 C6orf222P0C671 652 aaPredicted RBP3.32□□□□□ -1.88
USH2A-204ENST00000481786 GRK2P25098 689 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 GRK3P35626 688 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 INHBCP55103 352 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 SUMO1P63165 101 aaKnown RBP3.32□□□□□ -1.88
USH2A-204ENST00000481786 KIZQ2M2Z5 673 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 HABP4Q5JVS0 413 aaKnown RBP3.32□□□□□ -1.88
USH2A-204ENST00000481786 CYP4F22Q6NT55 531 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 PCSK4Q6UW60 755 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 DPH6Q7L8W6 267 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 ZNF627Q7L945 461 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 OTOP3Q7RTS5 596 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 ZC3H18Q86VM9 953 aaKnown RBP3.32□□□□□ -1.88
USH2A-204ENST00000481786 GLCCI1Q86VQ1 547 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 JMYQ8N9B5 988 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 PIP4K2CQ8TBX8 421 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 PMFBP1Q8TBY8 1022 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 PHOSPHO1Q8TCT1 267 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 SREK1Q8WXA9 508 aaKnown RBP3.32□□□□□ -1.88
USH2A-204ENST00000481786 DNAJC7Q99615 494 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 CDC6Q99741 560 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 PCDH18Q9HCL0 1135 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 NGRNQ9NPE2 291 aaKnown RBP3.32□□□□□ -1.88
USH2A-204ENST00000481786 DTLQ9NZJ0 730 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms