RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SUFUQ9UMX1 484 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 IQCA1LA6NCM1 817 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 HSPD1P10809 573 aaKnown RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 PDIA3P30101 505 aaKnown RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 POLGP54098 1239 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 GJC2Q5T442 439 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 SGSM3Q96HU1 749 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 CNBD2Q96M20 576 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 MTA3Q9BTC8 594 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 CAMSAP1Q5T5Y3 1602 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ZNF839A8K0R7 811 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 CCNE1P24864 410 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 CYTH1Q15438 398 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ODR4Q5SWX8 454 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 TRIM67Q6ZTA4 783 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ATG3Q9NT62 314 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ZHX2Q9Y6X8 837 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 HNRNPDLO14979 420 aaKnown RBP14.21□□□□□ -0.13
COL6A3-209ENST00000472056 PDE6AP16499 860 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 KIF19Q2TAC6 998 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 PNMA1Q8ND90 353 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 NSFL1CQ9UNZ2 370 aaKnown RBP14.21□□□□□ -0.13
COL6A3-209ENST00000472056 ZBBXA8MT70 800 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 RASSF9O75901 435 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 PSMA4P25789 261 aaKnown RBP14.21□□□□□ -0.13
COL6A3-209ENST00000472056 SYCP2LQ5T4T6 812 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 TRIM69Q86WT6 500 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 CPSF3Q9UKF6 684 aaKnown RBP14.21□□□□□ -0.13
COL6A3-209ENST00000472056 STAT4Q14765 748 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 SLC44A4Q53GD3 710 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 TUBGCP3Q96CW5 907 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 ETNK1Q9HBU6 452 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 SPAG6O75602 509 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 ZBED1O96006 694 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 PDHA1P08559 390 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 ELF1P32519 619 aa14.21□□□□□ -0.13
COL6A3-209ENST00000472056 MRPS26Q9BYN8 205 aaKnown RBP14.21□□□□□ -0.13
COL6A3-209ENST00000472056 MMP1P03956 469 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 PABPC4Q13310 644 aaKnown RBP eCLIP14.21□□□□□ -0.14
COL6A3-209ENST00000472056 SCYL2Q6P3W7 929 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 C16orf89Q6UX73 402 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 SKA2Q8WVK7 121 aaPredicted RBP14.21□□□□□ -0.14
COL6A3-209ENST00000472056 KCNJ14Q9UNX9 436 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 PER1O15534 1290 aaPredicted RBP14.21□□□□□ -0.14
COL6A3-209ENST00000472056 AGTP01019 485 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 LIFRP42702 1097 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 SCRN1Q12765 414 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 FAM102BQ5T8I3 360 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 RASSF3Q86WH2 238 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 RMDN1Q96DB5 314 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 ELAC2Q9BQ52 826 aaKnown RBP14.21□□□□□ -0.14
COL6A3-209ENST00000472056 MED10Q9BTT4 135 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 DISC1Q9NRI5 854 aa14.21□□□□□ -0.14
COL6A3-209ENST00000472056 ARHGEF16Q5VV41 709 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 LINC00301Q8NCQ3 95 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 SNF8Q96H20 258 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 KCNK16Q96T55 309 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 DDX56Q9NY93 547 aaKnown RBP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 TSC22D4Q9Y3Q8 395 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 A0A1W2PQC6 194 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 LRRIQ3A6PVS8 624 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 PSMA3P25788 255 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 RANBP1P43487 201 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 CARSP49589 748 aaKnown RBP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 RESP18Q5W5W9 173 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 ARMCX2Q7L311 632 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 TRIM63Q969Q1 353 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 NDST4Q9H3R1 872 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 STMN3Q9NZ72 180 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 HACD3Q9P035 362 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 TTC8Q8TAM2 541 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 ECT2Q9H8V3 914 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 KRT1P04264 644 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 RAD23BP54727 409 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 IL1RL1Q01638 556 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 RSPH1Q8WYR4 309 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 COG4Q9H9E3 785 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 LPXNO60711 386 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 CPA1P15085 419 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 BASP1P80723 227 aaKnown RBP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 EIF3HO15372 352 aaKnown RBP eCLIP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 SEC31AO94979 1220 aaKnown RBP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 FGGP02679 453 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 LAMC2Q13753 1193 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 AGBL2Q5U5Z8 902 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 GDAP1Q8TB36 358 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 MAN1B1Q9UKM7 699 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 LGALS16A8MUM7 142 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 MAP3K13O43283 966 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 TBC1D4O60343 1298 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 TBXAS1P24557 533 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 MAGOHP61326 146 aaKnown RBP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 CDR2LQ86X02 465 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-209ENST00000472056 CEP95Q96GE4 821 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 YIPF3Q9GZM5 350 aa14.2□□□□□ -0.14
COL6A3-209ENST00000472056 A0A0G2JND7 137 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 KRT87PA6NCN2 255 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 KLRF2D3W0D1 207 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 ENC1O14682 589 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 ACSL3O95573 720 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms