RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 BRINP2Q9C0B6 783 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 CHPF2Q9P2E5 772 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 KCNG1Q9UIX4 513 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 CBLCQ9ULV8 474 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 ATP23Q9Y6H3 246 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 PDPK1O15530 556 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 ADCY3O60266 1144 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 AMY2AP04746 511 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 AMY2BP19961 511 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 PAX3P23760 479 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 MC4RP32245 332 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 KCNQ1P51787 676 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 TOP3AQ13472 1001 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 MYBPC2Q14324 1141 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 NRN1LQ496H8 165 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 MAMDC2Q7Z304 686 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 SCUBE1Q8IWY4 988 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 PCDH19Q8TAB3 1148 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 PTPRN2Q92932 1015 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 DPYSL5Q9BPU6 564 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 C12orf65Q9H3J6 166 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 PNMA2Q9UL42 364 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 TBX22Q9Y458 520 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 TESMINQ9Y4I5 508 aa6.22□□□□□ -1.41
CCDC88A-210ENST00000468534 EXOC5O00471 708 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 CDC14BO60729 498 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 CUTAO60888 179 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 CR2P20023 1033 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 PTGS1P23219 599 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 DNM2P50570 870 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 JAM2P57087 298 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 SUMO1P63165 101 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 IL13RA1P78552 427 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 KLF10Q13118 480 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 C4orf46Q504U0 113 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 FIGNQ5HY92 759 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 OR14A2Q96R54 314 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 KIAA1683Q9H0B3 1180 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 ING1Q9UK53 422 aaPredicted RBP6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 NAP1L2Q9ULW6 460 aaPredicted RBP6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 OAZ3Q9UMX2 235 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 NR2E1Q9Y466 385 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 PCDHA9Q9Y5H5 950 aa6.21□□□□□ -1.42
CCDC88A-210ENST00000468534 NPIPB8E9PQR5 432 aa6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 DIAPH1O60610 1272 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 HMGCRP04035 888 aa6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 C6orf222P0C671 652 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 COMTP21964 271 aa6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 CRY1Q16526 586 aa6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 USP39Q53GS9 565 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 ZMAT1Q5H9K5 638 aa6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 ZC3H7AQ8IWR0 971 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 ZNF669Q96BR6 464 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 INCENPQ9NQS7 918 aa6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 CDC42EP3Q9UKI2 254 aa6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 NOP58Q9Y2X3 529 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 MSRB2Q9Y3D2 182 aa6.2□□□□□ -1.42
CCDC88A-210ENST00000468534 CCDC66A2RUB6 948 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 CCER2I3L3R5 266 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 ACO1P21399 889 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 IBSPP21815 317 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 GJA4P35212 333 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 ETV4P43268 484 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 AGBL4Q5VU57 503 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 RNF207Q6ZRF8 634 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 C16orf59Q7L2K0 433 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 OTOP2Q7RTS6 562 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 CISD2Q8N5K1 135 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 ZBTB38Q8NAP3 1195 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 KRTAP17-1Q9BYP8 105 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 CSRNP2Q9H175 543 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 PCED1AQ9H1Q7 454 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 GABBR1Q9UBS5 961 aa6.19□□□□□ -1.42
CCDC88A-210ENST00000468534 ARVCFO00192 962 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 CRTAMO95727 393 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 C4BPAP04003 597 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 FAM153BP0C7A2 387 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 AOAHP28039 575 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 RASGRF1Q13972 1273 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 TBR1Q16650 682 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 CCDC144BQ3MJ40 725 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 FAM47CQ5HY64 1035 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 WDR78Q5VTH9 848 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 RINLQ6ZS11 566 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 TSHZ1Q6ZSZ6 1077 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 LARP4Q71RC2 724 aaKnown RBP eCLIP6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 WDR48Q8TAF3 677 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 IPO4Q8TEX9 1081 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 PNISRQ8TF01 805 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 EXTL1Q92935 676 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 EXOC2Q96KP1 924 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 TANGO6Q9C0B7 1094 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 SMURF1Q9HCE7 757 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 UCKL1Q9NWZ5 548 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 GALNT8Q9NY28 637 aa6.18□□□□□ -1.42
CCDC88A-210ENST00000468534 ZNF561-AS1K7EIQ3 104 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 WNT9AO14904 365 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 RAD17O75943 681 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 FOXE3Q13461 319 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 LRSAM1Q6UWE0 723 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms