RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PDGFDQ9GZP0 370 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 PLCB1Q9NQ66 1216 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 ZNF277Q9NRM2 450 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 OLFML3Q9NRN5 406 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 HPCAL4Q9UM19 191 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 PACSIN2Q9UNF0 486 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 SYF2O95926 243 aaKnown RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 VIL1P09327 827 aaKnown RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 PAFAH1B1P43034 410 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 LMAN1P49257 510 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 PRELPP51888 382 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 COG2Q14746 738 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 SPDYE2Q495Y8 402 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 CEP55Q53EZ4 464 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 CCDC70Q6NSX1 233 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 OGFOD1Q8N543 542 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 UNC45AQ9H3U1 944 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 VCPKMTQ9H867 229 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 VIPAS39Q9H9C1 493 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 SIX2Q9NPC8 291 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 LUC7LQ9NQ29 371 aaKnown RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 RBM12Q9NTZ6 932 aaKnown RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 SCAF8Q9UPN6 1271 aaKnown RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 ZC3H4Q9UPT8 1303 aaKnown RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 ZMYM2Q9UBW7 1377 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 GAP43P17677 238 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 LDHDQ86WU2 507 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 LARGE2Q8N3Y3 721 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 FAM71BQ8TC56 605 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 RIN2Q8WYP3 895 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 BORCS6Q96GS4 357 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 FIZ1Q96SL8 496 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 ZNF577Q9BSK1 485 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 ACBD3Q9H3P7 528 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 PARVGQ9HBI0 331 aa9.8□□□□□ -0.84
SYNE1-217ENST00000466159 METTL14Q9HCE5 456 aaKnown RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 MRPL11Q9Y3B7 192 aaKnown RBP9.8□□□□□ -0.84
SYNE1-217ENST00000466159 COL4A5P29400 1685 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 PSME4Q14997 1843 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 CCDC66A2RUB6 948 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 GRID2IPA4D2P6 1211 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 HNRNPH2P55795 449 aaKnown RBP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 TRAF1Q13077 416 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 ZNF772Q68DY9 489 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 GBP6Q6ZN66 633 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 AENQ8WTP8 325 aaKnown RBP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 GCNT4Q9P109 453 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 PCDHGC5Q9Y5F6 944 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 RBBP6Q7Z6E9 1792 aaKnown RBP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 SHTN1A0MZ66 631 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 DDX39AO00148 427 aaKnown RBP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 EIF3DO15371 548 aaKnown RBP eCLIP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 SLC16A3O15427 465 aaKnown RBP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 CAP2P40123 477 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 AARSP49588 968 aaKnown RBP eCLIP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 RNASE9P60153 205 aaKnown RBP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 CFAP221Q4G0U5 840 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 MEI1Q5TIA1 1274 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-217ENST00000466159 ZNF720Q7Z2F6 126 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 BANK1Q8NDB2 785 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 AGBL1Q96MI9 1066 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 GOLPH3Q9H4A6 298 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 MED4Q9NPJ6 270 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 PKD2L1Q9P0L9 805 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 TSKSQ9UJT2 592 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 NAGPAQ9UK23 515 aa9.79□□□□□ -0.84
SYNE1-217ENST00000466159 MYH11P35749 1972 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 KIF13BQ9NQT8 1826 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 IPO5O00410 1097 aaKnown RBP9.78□□□□□ -0.84
SYNE1-217ENST00000466159 RNF40O75150 1001 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 INPP5BP32019 993 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 GGCXP38435 758 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 JAM2P57087 298 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 EN1Q05925 392 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-217ENST00000466159 ALKBH5Q6P6C2 394 aaKnown RBP9.78□□□□□ -0.84
SYNE1-217ENST00000466159 FAM178BQ8IXR5 827 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 FAM186BQ8IYM0 893 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 KCTD17Q8N5Z5 321 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 TTLL6Q8N841 843 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 NACC1Q96RE7 527 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 LXNQ9BS40 222 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 PLEKHA4Q9H4M7 779 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 PSD3Q9NYI0 1048 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 FRMPD4Q14CM0 1322 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 AGPSO00116 658 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 ITGB5P18084 799 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 PSMC2P35998 433 aaKnown RBP9.78□□□□□ -0.84
SYNE1-217ENST00000466159 CYP2J2P51589 502 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 PTPROQ16827 1216 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 ODR4Q5SWX8 454 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 C8orf74Q6P047 294 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 SND1Q7KZF4 910 aaKnown RBP eCLIP9.78□□□□□ -0.84
SYNE1-217ENST00000466159 FAM160B2Q86V87 743 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 FAM204AQ9H8W3 233 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 COL20A1Q9P218 1284 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 STIM2Q9P246 746 aa9.78□□□□□ -0.84
SYNE1-217ENST00000466159 BZW2Q9Y6E2 419 aaKnown RBP9.78□□□□□ -0.84
SYNE1-217ENST00000466159 TBC1D12O60347 775 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 PRKCIP41743 596 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms