RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 ELL2O00472 640 aaPredicted RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 ZBTB22O15209 634 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 F2P00734 622 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 GH1P01241 217 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 POLR3DP05423 398 aaPredicted RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 GNAT1P11488 350 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 SCG2P13521 617 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 HLA-EP13747 358 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 SHMT1P34896 483 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 ADRA1BP35368 520 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 USP5P45974 858 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 PHKA1P46020 1223 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 VASPP50552 380 aaPredicted RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 UCNP55089 124 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 FAM193AP78312 1265 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 IRX4P78413 519 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 PDE4DQ08499 809 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 RASGRF1Q13972 1273 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 LRRC32Q14392 662 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 KARSQ15046 597 aaKnown RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 PWP2Q15269 919 aaKnown RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 MAPK6Q16659 721 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 ATP2B3Q16720 1220 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 PLK5Q496M5 336 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 BROXQ5VW32 411 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 PARM1Q6UWI2 310 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 CLEC18BQ6UXF7 455 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 TOGARAM2Q6ZUX3 1019 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 TMPRSS7Q7RTY8 843 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 CYP2U1Q7Z449 544 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 MMP21Q8N119 569 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 PNPLA1Q8N8W4 532 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 SPATA5Q8NB90 893 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 CLEC18CQ8NCF0 446 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 ST13P5Q8NFI4 369 aaPredicted RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 CMASQ8NFW8 434 aaPredicted RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 SLC22A17Q8WUG5 538 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 DNAAF4Q8WXU2 420 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 FAM3CQ92520 227 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 SMG7Q92540 1137 aaKnown RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 COPS5Q92905 334 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 NXPE2Q96DL1 559 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 ZNF558Q96NG5 402 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 DNAJC2Q99543 621 aaKnown RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 RPP25Q9BUL9 199 aaKnown RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 RHOBTB2Q9BYZ6 727 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 OSBPL7Q9BZF2 842 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 ADAMTS10Q9H324 1103 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 PIDD1Q9HB75 910 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 HEBP1Q9NRV9 189 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 RNF146Q9NTX7 359 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 TYW1Q9NV66 732 aaKnown RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 PCDHB7Q9Y5E2 793 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 DDX49Q9Y6V7 483 aaKnown RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 PTPRSQ13332 1948 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 SPTAN1Q13813 2472 aaKnown RBP3.16□□□□□ -1.9
USP40-211ENST00000464956 IGSF10Q6WRI0 2623 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 FRYLO94915 3013 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 TICRRQ7Z2Z1 1910 aa3.15□□□□□ -1.9
USP40-211ENST00000464956 TENM4Q6N022 2769 aa3.15□□□□□ -1.9
USP40-211ENST00000464956 PIEZO2Q9H5I5 2752 aa3.15□□□□□ -1.9
USP40-211ENST00000464956 ASXL3Q9C0F0 2248 aa3.15□□□□□ -1.9
USP40-211ENST00000464956 CCDC195A0A1B0GUA6 201 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 B4DLN1 442 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 HAS3O00219 553 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 GRM8O00222 908 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 MEFVO15553 781 aaPredicted RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 DIAPH2O60879 1101 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 OPHN1O60890 802 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 ZNF286BP0CG31 522 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 KRT10P13645 584 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 RPL17P18621 184 aaKnown RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 IBSPP21815 317 aaPredicted RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 KLRC2P26717 231 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 GBP1P32455 592 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 AFMP43652 599 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 GATMP50440 423 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 MRPL12P52815 198 aaKnown RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 TMPRSS3P57727 454 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 PPP4CP60510 307 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 TLE1Q04724 770 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 TLE3Q04726 772 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 SRSF11Q05519 484 aaKnown RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 TKFCQ3LXA3 575 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 TRIM61Q5EBN2 209 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 FAM26DQ5JW98 314 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 CCDC102BQ68D86 513 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 NAA16Q6N069 864 aaPredicted RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 KCNT2Q6UVM3 1135 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 NSMFQ6X4W1 530 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 NFXL1Q6ZNB6 911 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 TSHZ1Q6ZSZ6 1077 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 CHST3Q7LGC8 479 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 RSPH3Q86UC2 560 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 CERS3Q8IU89 383 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 PLEKHM2Q8IWE5 1019 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 FEZF2Q8TBJ5 459 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 PI4K2BQ8TCG2 481 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 ZNF384Q8TF68 577 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 TTC9Q92623 222 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms