RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MYH15Q9Y2K3 1946 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 GMNCA6NCL1 334 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 PHF20L1A8MW92 1017 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 RPS6KA5O75582 802 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 HNRNPH1P31943 449 aaKnown RBP12.9□□□□□ -0.34
MSH6-204ENST00000445503 GBP2P32456 591 aaPredicted RBP12.9□□□□□ -0.34
MSH6-204ENST00000445503 CASP5P51878 434 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 DR1Q01658 176 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 LRCH2Q5VUJ6 765 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 CATSPER3Q86XQ3 398 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 CCDC50Q8IVM0 306 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 TRIM59Q8IWR1 403 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 UBL4BQ8N7F7 174 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 MDM1Q8TC05 714 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 SH2D3AQ9BRG2 576 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 AKAP11Q9UKA4 1901 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 ERVK-9P63128 1117 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 MEI1Q5TIA1 1274 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 RIOX1Q9H6W3 641 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 ESYT2A0FGR8 921 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 KRT5P13647 590 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 SNX1Q13596 522 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 TNIP1Q15025 636 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 PTGISQ16647 500 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 OTUD6AQ7L8S5 288 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 PPM1KQ8N3J5 372 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 TBC1D31Q96DN5 1066 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 UBE2TQ9NPD8 197 aaPredicted RBP12.89□□□□□ -0.35
MSH6-204ENST00000445503 MTUS1Q9ULD2 1270 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 MYH10P35580 1976 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 C4AP0C0L4 1744 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 C4BP0C0L5 1744 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 NEFHP12036 1026 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 MYL7Q01449 175 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 GRIPAP1Q4V328 841 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 HAS1Q92839 578 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 GLG1Q92896 1179 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 OSGEPQ9NPF4 335 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 CCDC169A6NNP5 214 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 M0R2N6 131 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 CLTAP09496 248 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 USP11P51784 963 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 ORC2Q13416 577 aaPredicted RBP12.89□□□□□ -0.35
MSH6-204ENST00000445503 RBM26Q5T8P6 1007 aaKnown RBP12.89□□□□□ -0.35
MSH6-204ENST00000445503 PPP4R3CPQ6ZMV5 832 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 CPXCR1Q8N123 301 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 TBC1D16Q8TBP0 767 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 DNAJC19Q96DA6 116 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 PURBQ96QR8 312 aaKnown RBP12.89□□□□□ -0.35
MSH6-204ENST00000445503 MLXIPLQ9NP71 852 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 FAM114A2Q9NRY5 505 aa12.89□□□□□ -0.35
MSH6-204ENST00000445503 K7ENM7 598 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 AKAP3O75969 853 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 EZRP15311 586 aaKnown RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 LMNB1P20700 586 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 C10orf76Q5T2E6 689 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 PRR5LQ6MZQ0 368 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 ZNF662Q6ZS27 426 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 CAVIN3Q969G5 261 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 IKZF4Q9H2S9 585 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 HOMER2Q9NSB8 354 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 EVI5O60447 810 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 BCRP11274 1271 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 PON1P27169 355 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 HNRNPH3P31942 346 aaKnown RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 PPP2R2AP63151 447 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 KCNA1Q09470 495 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 CCDC38Q502W7 563 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 FAM133BQ5BKY9 247 aaKnown RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 HGSNATQ68CP4 663 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 NSMFQ6X4W1 530 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 SPATS2Q86XZ4 545 aaKnown RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 MYCBPAPQ8TBZ2 947 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 TCP11Q8WWU5 503 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 VEZTQ9HBM0 779 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 INTS9Q9NV88 658 aaKnown RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 SWAP70Q9UH65 585 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 TRPM3Q9HCF6 1732 aaPredicted RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 PHRF1Q9P1Y6 1649 aaKnown RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 FRMD3A2A2Y4 597 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 CCDC188H7C350 402 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 PJA2O43164 708 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 TRIP13Q15645 432 aaPredicted RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 ABCB5Q2M3G0 1257 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 PPP4R3AQ6IN85 833 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 SLC35G2Q8TBE7 412 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 GOLGA8IPA6NC78 632 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 GOLGA8JA6NMD2 632 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 BBOX1O75936 387 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 NFIAQ12857 509 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 DYDC2Q96IM9 177 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 ISCUQ9H1K1 167 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 TYW1Q9NV66 732 aaKnown RBP12.88□□□□□ -0.35
MSH6-204ENST00000445503 POLLQ9UGP5 575 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 GGT7Q9UJ14 662 aa12.88□□□□□ -0.35
MSH6-204ENST00000445503 USP54Q70EL1 1684 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 F5H6K3 240 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 PPEF1O14829 653 aaPredicted RBP12.87□□□□□ -0.35
MSH6-204ENST00000445503 KLRC3Q07444 240 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 SLC20A2Q08357 652 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms