RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 FAM160A1Q05DH4 1040 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 PTPN11Q06124 597 aaPredicted RBP17.6■□□□□ 0.41
USP40-206ENST00000443711 PPFIA1Q13136 1202 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 MTERF2Q49AM1 385 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 NFRKBQ6P4R8 1299 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 TNS4Q8IZW8 715 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 RAD54LQ92698 747 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 CEP170P1Q96L14 293 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 SENP6Q9GZR1 1112 aaPredicted RBP17.6■□□□□ 0.41
USP40-206ENST00000443711 CYP26B1Q9NR63 512 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 BLOC1S4Q9NUP1 217 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 HDAC6Q9UBN7 1215 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 NRCAMQ92823 1304 aa17.6■□□□□ 0.41
USP40-206ENST00000443711 TRIP12Q14669 1992 aaPredicted RBP17.59■□□□□ 0.41
USP40-206ENST00000443711 ARID2Q68CP9 1835 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 GRIN2DO15399 1336 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 ARHGEF35A5YM69 484 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 TMEM150BA6NC51 233 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 SSBP05455 408 aaKnown RBP eCLIP17.59■□□□□ 0.41
USP40-206ENST00000443711 PLA2G4BP0C869 781 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 COL6A1P12109 1028 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 EN2P19622 333 aaPredicted RBP17.59■□□□□ 0.41
USP40-206ENST00000443711 RARRES1P49788 294 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 NPEPPSP55786 919 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 TARBP2Q15633 366 aaKnown RBP17.59■□□□□ 0.41
USP40-206ENST00000443711 GRIK4Q16099 956 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 E2F4Q16254 413 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 FAM47CQ5HY64 1035 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 PLA2G4FQ68DD2 849 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 NECAB2Q7Z6G3 386 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 SESTD1Q86VW0 696 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 EXOC8Q8IYI6 725 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 FMR1NBQ8N0W7 255 aaPredicted RBP17.59■□□□□ 0.41
USP40-206ENST00000443711 LARP4BQ92615 738 aaKnown RBP17.59■□□□□ 0.41
USP40-206ENST00000443711 BHMT2Q9H2M3 363 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 C11orf49Q9H6J7 331 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 SETD4Q9NVD3 440 aa17.59■□□□□ 0.41
USP40-206ENST00000443711 C17orf102A2RUQ5 167 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 ARVCFO00192 962 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 ZNF202O95125 648 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 SLFN14P0C7P3 912 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 LIG1P18858 919 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 PTMSP20962 102 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 RFC5P40937 340 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 IGBP1P78318 339 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 MCM6Q14566 821 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 NAALADL2Q58DX5 795 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 SV2BQ7L1I2 683 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 CEP57L1Q8IYX8 460 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 SYT2Q8N9I0 419 aaPredicted RBP17.58■□□□□ 0.4
USP40-206ENST00000443711 SLC43A3Q8NBI5 491 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 ENGASEQ8NFI3 743 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 DIS3LQ8TF46 1054 aaKnown RBP17.58■□□□□ 0.4
USP40-206ENST00000443711 LRRC15Q8TF66 581 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 PPP1R13LQ8WUF5 828 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 PAWRQ96IZ0 340 aaKnown RBP17.58■□□□□ 0.4
USP40-206ENST00000443711 MAGEF1Q9HAY2 307 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 GTF2IRD1Q9UHL9 959 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 SERTAD1Q9UHV2 236 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 CENPFP49454 3210 aa17.58■□□□□ 0.4
USP40-206ENST00000443711 EVPLQ92817 2033 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 ZBTB42B2RXF5 422 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 MAGEB2O15479 319 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 KLRC1P26715 233 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 SLC12A3P55017 1021 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 TBC1D8BQ0IIM8 1120 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 DHX8Q14562 1220 aaKnown RBP17.57■□□□□ 0.4
USP40-206ENST00000443711 LONRF3Q496Y0 759 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 PADI6Q6TGC4 694 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 SLC39A5Q6ZMH5 540 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 LMBR1Q8WVP7 490 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 TRAPPC12Q8WVT3 735 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 CCDC34Q96HJ3 373 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 CEP89Q96ST8 783 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 JPH2Q9BR39 696 aaPredicted RBP17.57■□□□□ 0.4
USP40-206ENST00000443711 SH2D3AQ9BRG2 576 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 LRRC27Q9C0I9 530 aa17.57■□□□□ 0.4
USP40-206ENST00000443711 CCDC85CA6NKD9 419 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 DGAT1O75907 488 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 HOXC8P31273 242 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 CDK7P50613 346 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 POLGP54098 1239 aaPredicted RBP17.56■□□□□ 0.4
USP40-206ENST00000443711 ADAM17P78536 824 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 AMPD3Q01432 767 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 SNW1Q13573 536 aaKnown RBP17.56■□□□□ 0.4
USP40-206ENST00000443711 KANK3Q6NY19 840 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 MTHFD1LQ6UB35 978 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 KRBA2Q6ZNG9 492 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 CNNM3Q8NE01 707 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 SLC7A3Q8WY07 619 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 KCND2Q9NZV8 630 aa17.56■□□□□ 0.4
USP40-206ENST00000443711 ACTN4O43707 911 aaKnown RBP17.55■□□□□ 0.4
USP40-206ENST00000443711 KINO60870 393 aaKnown RBP17.55■□□□□ 0.4
USP40-206ENST00000443711 MAFO75444 373 aaPredicted RBP17.55■□□□□ 0.4
USP40-206ENST00000443711 NR1I2O75469 434 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 C22orf31O95567 290 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 CYP11B2P19099 503 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 MARCH8Q5T0T0 291 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 C1orf53Q5VUE5 145 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 GDF6Q6KF10 455 aaPredicted RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms