RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 KRBA2Q6ZNG9 492 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 SV2BQ7L1I2 683 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 EXOC8Q8IYI6 725 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 CEP57L1Q8IYX8 460 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 LRRC15Q8TF66 581 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 LARP4BQ92615 738 aaKnown RBP13.74□□□□□ -0.21
LINC00339-204ENST00000434233 DHX58Q96C10 678 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 GLT1D1Q96MS3 346 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 SEZ6LQ9BYH1 1024 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 LRRC27Q9C0I9 530 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 SERTAD1Q9UHV2 236 aa13.74□□□□□ -0.21
LINC00339-204ENST00000434233 COL1A2P08123 1366 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 SCN10AQ9Y5Y9 1956 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 RRN3P2A6NIE6 340 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 ACTN4O43707 911 aaKnown RBP13.73□□□□□ -0.21
LINC00339-204ENST00000434233 INSRRP14616 1297 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 SLC12A3P55017 1021 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 AMPD3Q01432 767 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 MCM6Q14566 821 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 TARBP2Q15633 366 aaKnown RBP13.73□□□□□ -0.21
LINC00339-204ENST00000434233 XKR9Q5GH70 373 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 TRMT1LQ7Z2T5 733 aaKnown RBP13.73□□□□□ -0.21
LINC00339-204ENST00000434233 GPT2Q8TD30 523 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 VTI1AQ96AJ9 217 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 CCDC34Q96HJ3 373 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 CEP170P1Q96L14 293 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 CEP89Q96ST8 783 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 BHMT2Q9H2M3 363 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 CYP26B1Q9NR63 512 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 KBTBD4Q9NVX7 518 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 SEPT9Q9UHD8 586 aaPredicted RBP13.73□□□□□ -0.21
LINC00339-204ENST00000434233 TRPC6Q9Y210 931 aa13.73□□□□□ -0.21
LINC00339-204ENST00000434233 NRCAMQ92823 1304 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 MNX1P50219 401 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-204ENST00000434233 NPEPPSP55786 919 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 PTPN11Q06124 597 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-204ENST00000434233 SKOR2Q2VWA4 1001 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-204ENST00000434233 NBPF20Q3BBV1 942 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 RINT1Q6NUQ1 792 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 NFRKBQ6P4R8 1299 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 SH3RF1Q7Z6J0 888 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 SESTD1Q86VW0 696 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 CNNM3Q8NE01 707 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 TNMDQ9H2S6 317 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 PDLIM7Q9NR12 457 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 DACT1Q9NYF0 836 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 KCND2Q9NZV8 630 aa13.72□□□□□ -0.21
LINC00339-204ENST00000434233 A0A1W2PQ45 241 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-204ENST00000434233 A0A1W2PQY0 241 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 ARHGEF35A5YM69 484 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 TMEM150BA6NC51 233 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 ZBTB42B2RXF5 422 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 MAGEB2O15479 319 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 KINO60870 393 aaKnown RBP13.71□□□□□ -0.21
LINC00339-204ENST00000434233 DGAT1O75907 488 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 SMIM10L2AP0DMW4 78 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 SMIM10L2BP0DMW5 78 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 GNAT1P11488 350 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 ITGA7Q13683 1181 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 MTERF2Q49AM1 385 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 COL13A1Q5TAT6 717 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-204ENST00000434233 PLA2G4FQ68DD2 849 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 PADI6Q6TGC4 694 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 C1orf186Q6ZWK4 172 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 C7orf31Q8N865 590 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 SLC43A3Q8NBI5 491 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 PAGE5Q96GU1 130 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 CCDC43Q96MW1 224 aaKnown RBP13.71□□□□□ -0.21
LINC00339-204ENST00000434233 C7orf25Q9BPX7 421 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 JPH2Q9BR39 696 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-204ENST00000434233 DHX33Q9H6R0 707 aaKnown RBP13.71□□□□□ -0.21
LINC00339-204ENST00000434233 STARD7Q9NQZ5 370 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 BMP2KQ9NSY1 1161 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-204ENST00000434233 HDAC6Q9UBN7 1215 aa13.71□□□□□ -0.21
LINC00339-204ENST00000434233 GRIN2DO15399 1336 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 IGKV6-21A0A0C4DH24 114 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 A0A0U1RQG5 324 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-204ENST00000434233 C17orf102A2RUQ5 167 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 MAFO75444 373 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-204ENST00000434233 SSBP05455 408 aaKnown RBP eCLIP13.7□□□□□ -0.22
LINC00339-204ENST00000434233 MYL1P05976 194 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 CYP11B2P19099 503 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 KLRC1P26715 233 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 HOXC8P31273 242 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 RFC5P40937 340 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 CHMP4BP1P59074 171 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 ADAM17P78536 824 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 MDM2Q00987 491 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-204ENST00000434233 PPFIA1Q13136 1202 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 DHX8Q14562 1220 aaKnown RBP13.7□□□□□ -0.22
LINC00339-204ENST00000434233 GRIK4Q16099 956 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 ARSHQ5FYA8 562 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 CNNM4Q6P4Q7 775 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 MTRQ99707 1265 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 SH2D3AQ9BRG2 576 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 TIPINQ9BVW5 301 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 SETD4Q9NVD3 440 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 GTF2IRD1Q9UHL9 959 aa13.7□□□□□ -0.22
LINC00339-204ENST00000434233 HOOK1Q9UJC3 728 aaKnown RBP13.7□□□□□ -0.22
LINC00339-204ENST00000434233 MBLAC1A4D2B0 266 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms