RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ZNF484Q5JVG2 852 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 TRAF7Q6Q0C0 670 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 LINC01465Q8N7H1 131 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 NEK9Q8TD19 979 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 TRAPPC12Q8WVT3 735 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 VWCEQ96DN2 955 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 ZBTB10Q96DT7 871 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 FAM167AQ96KS9 214 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 ZNF396Q96N95 335 aaPredicted RBP13.93□□□□□ -0.18
USP40-205ENST00000430158 NOC4LQ9BVI4 516 aaKnown RBP13.93□□□□□ -0.18
USP40-205ENST00000430158 ZSWIM4Q9H7M6 989 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 TUFT1Q9NNX1 390 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 LRWD1Q9UFC0 647 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 RCOR1Q9UKL0 485 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 CIZ1Q9ULV3 898 aaPredicted RBP13.93□□□□□ -0.18
USP40-205ENST00000430158 CEP131Q9UPN4 1083 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 SRPRBQ9Y5M8 271 aaKnown RBP13.93□□□□□ -0.18
USP40-205ENST00000430158 LOXHD1Q8IVV2 1947 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 COL1A2P08123 1366 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 SCN5AQ14524 2016 aa13.93□□□□□ -0.18
USP40-205ENST00000430158 RANBP2P49792 3224 aaKnown RBP13.92□□□□□ -0.18
USP40-205ENST00000430158 VWA3AA6NCI4 1184 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 EVI5O60447 810 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 C22orf31O95567 290 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 CYP4A11Q02928 519 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 MLLT1Q03111 559 aaPredicted RBP13.92□□□□□ -0.18
USP40-205ENST00000430158 PTK7Q13308 1070 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 TMEM266Q2M3C6 531 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 HYIQ5T013 277 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 AXDND1Q5T1B0 1012 aaPredicted RBP13.92□□□□□ -0.18
USP40-205ENST00000430158 MTHFD1LQ6UB35 978 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 RUFY4Q6ZNE9 571 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 USP49Q70CQ1 688 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 RPAINQ86UA6 219 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 C7orf61Q8IZ16 206 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 DPF3Q92784 378 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 PNMA5Q96PV4 448 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 NRBP2Q9NSY0 501 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 DAXXQ9UER7 740 aaPredicted RBP13.92□□□□□ -0.18
USP40-205ENST00000430158 PCDHA2Q9Y5H9 948 aa13.92□□□□□ -0.18
USP40-205ENST00000430158 TRIOBPQ9H2D6 2365 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 UMODL1Q5DID0 1318 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 A0A087WWV3 80 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 IGKV6-21A0A0C4DH24 114 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 SPTLC2O15270 562 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 TLR3O15455 904 aaKnown RBP13.91□□□□□ -0.18
USP40-205ENST00000430158 PPP6R2O75170 966 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 XRCC6P12956 609 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP40-205ENST00000430158 MUTP22033 750 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 LONP1P36776 959 aaKnown RBP13.91□□□□□ -0.18
USP40-205ENST00000430158 NPEPPSP55786 919 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 GPNMBQ14956 572 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 FOXD4L6Q3SYB3 417 aaPredicted RBP13.91□□□□□ -0.18
USP40-205ENST00000430158 FOXD4L3Q6VB84 417 aaPredicted RBP13.91□□□□□ -0.18
USP40-205ENST00000430158 KCNK18Q7Z418 384 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 TPH2Q8IWU9 490 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 LRRC15Q8TF66 581 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 AK8Q96MA6 479 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 CLIC6Q96NY7 704 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 IPO9Q96P70 1041 aaKnown RBP13.91□□□□□ -0.18
USP40-205ENST00000430158 CSRNP2Q9H175 543 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 SIP14410 1827 aa13.91□□□□□ -0.18
USP40-205ENST00000430158 DDX11L8A8MPP1 907 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 RBAK-RBAKDNI3L0D1 243 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 GNAT1P11488 350 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 KLRC1P26715 233 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 YWHABP31946 246 aaKnown RBP13.9□□□□□ -0.18
USP40-205ENST00000430158 GRB10Q13322 594 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 TMEM119Q4V9L6 283 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 PLA2G4FQ68DD2 849 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 CKAP2LQ8IYA6 745 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 KIAA0319LQ8IZA0 1049 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 SH2D3AQ9BRG2 576 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 RAB34Q9BZG1 259 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 WNT8AQ9H1J5 351 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 ANKEF1Q9NU02 776 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 TMEM39AQ9NV64 488 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 TUBE1Q9UJT0 475 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 ZMYND8Q9ULU4 1186 aaPredicted RBP13.9□□□□□ -0.18
USP40-205ENST00000430158 TANC1Q9C0D5 1861 aa13.9□□□□□ -0.18
USP40-205ENST00000430158 H0YGN5 161 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 SLC26A4O43511 780 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 DKC1O60832 514 aaKnown RBP eCLIP13.89□□□□□ -0.19
USP40-205ENST00000430158 TIMP1P01033 207 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 CCT6AP40227 531 aaKnown RBP13.89□□□□□ -0.19
USP40-205ENST00000430158 IGBP1P78318 339 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 MBTPS1Q14703 1052 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 STK38Q15208 465 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 FAM26DQ5JW98 314 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 TRMT1LQ7Z2T5 733 aaKnown RBP13.89□□□□□ -0.19
USP40-205ENST00000430158 KRI1Q8N9T8 703 aaKnown RBP13.89□□□□□ -0.19
USP40-205ENST00000430158 ERMNQ8TAM6 284 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 SNX29Q8TEQ0 813 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 PIGOQ8TEQ8 1089 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 LEO1Q8WVC0 666 aaPredicted RBP13.89□□□□□ -0.19
USP40-205ENST00000430158 TNPO1Q92973 898 aaKnown RBP13.89□□□□□ -0.19
USP40-205ENST00000430158 EPSTI1Q96J88 318 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 CCSER1Q9C0I3 900 aa13.89□□□□□ -0.19
USP40-205ENST00000430158 DHX33Q9H6R0 707 aaKnown RBP13.89□□□□□ -0.19
USP40-205ENST00000430158 CYP26B1Q9NR63 512 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms