RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 NBNO60934 754 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 HSP90AA1P07900 732 aaKnown RBP20.91■□□□□ 0.94
PTCD3-204ENST00000418628 KLRC1P26715 233 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 THPOP40225 353 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 TECP42680 631 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 PDIA5Q14554 519 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 TMEM240Q5SV17 173 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 C9orf50Q5SZB4 431 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 ARL6IP4Q66PJ3 421 aaKnown RBP20.91■□□□□ 0.94
PTCD3-204ENST00000418628 PSRC1Q6PGN9 363 aaPredicted RBP20.91■□□□□ 0.94
PTCD3-204ENST00000418628 RETREG2Q8NC44 543 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.91■□□□□ 0.942e-9■□□□□ 10.2
PTCD3-204ENST00000418628 POLR3CQ9BUI4 534 aaPredicted RBP20.91■□□□□ 0.94
PTCD3-204ENST00000418628 ZSCAN16Q9H4T2 348 aaPredicted RBP20.91■□□□□ 0.94
PTCD3-204ENST00000418628 ZSWIM4Q9H7M6 989 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 NRBP2Q9NSY0 501 aa20.91■□□□□ 0.94
PTCD3-204ENST00000418628 KDM3AQ9Y4C1 1321 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 CYP4A11Q02928 519 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 PKP1Q13835 747 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 CTTNQ14247 550 aaKnown RBP20.9■□□□□ 0.94
PTCD3-204ENST00000418628 PTPAQ15257 358 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 TMEM266Q2M3C6 531 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 DNAJB3Q8WWF6 145 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 TUFT1Q9NNX1 390 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 SEPT9Q9UHD8 586 aaPredicted RBP20.9■□□□□ 0.94
PTCD3-204ENST00000418628 PPME1Q9Y570 386 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 NLRC5Q86WI3 1866 aa20.9■□□□□ 0.94
PTCD3-204ENST00000418628 RSPH10B2B2RC85 870 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 MAGEB2O15479 319 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 MED24O75448 989 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 BMP15O95972 392 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 CHRNA1P02708 482 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 RSPH10BP0C881 870 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 MUTP22033 750 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 RPA1P27694 616 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 MKRN4PQ13434 485 aaPredicted RBP20.89■□□□□ 0.93
PTCD3-204ENST00000418628 FAM173BQ6P4H8 233 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 CATSPER3Q86XQ3 398 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 KIAA0319LQ8IZA0 1049 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 OSBPL7Q9BZF2 842 aa20.89■□□□□ 0.93
PTCD3-204ENST00000418628 FTOQ9C0B1 505 aaKnown RBP eCLIP20.89■□□□□ 0.93
PTCD3-204ENST00000418628 ACRP10323 421 aa20.88■□□□□ 0.93
PTCD3-204ENST00000418628 YWHABP31946 246 aaKnown RBP20.88■□□□□ 0.93
PTCD3-204ENST00000418628 MRPS6P82932 125 aaKnown RBP20.88■□□□□ 0.93
PTCD3-204ENST00000418628 SF3A1Q15459 793 aaKnown RBP20.88■□□□□ 0.93
PTCD3-204ENST00000418628 SHHQ15465 462 aa20.88■□□□□ 0.93
PTCD3-204ENST00000418628 PLA2G4FQ68DD2 849 aa20.88■□□□□ 0.93
PTCD3-204ENST00000418628 RPUSD2Q8IZ73 545 aaKnown RBP20.88■□□□□ 0.93
PTCD3-204ENST00000418628 HERVK_113Q902F9 699 aa20.88■□□□□ 0.93
PTCD3-204ENST00000418628 CYP26B1Q9NR63 512 aa20.88■□□□□ 0.93
PTCD3-204ENST00000418628 MAFO75444 373 aaPredicted RBP20.87■□□□□ 0.93
PTCD3-204ENST00000418628 F13A1P00488 732 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 CTSHP09668 335 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 ZSCAN22P10073 491 aaPredicted RBP20.87■□□□□ 0.93
PTCD3-204ENST00000418628 BECN1Q14457 450 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 TCTN1Q2MV58 587 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 MTERF2Q49AM1 385 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 HAUS3Q68CZ6 603 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 ZNF365Q70YC5 407 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 TRMT1LQ7Z2T5 733 aaKnown RBP20.87■□□□□ 0.93
PTCD3-204ENST00000418628 RSPH3Q86UC2 560 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 TPH2Q8IWU9 490 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 NME8Q8N427 588 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 ZNF579Q8NAF0 562 aaKnown RBP20.87■□□□□ 0.93
PTCD3-204ENST00000418628 SPRYD3Q8NCJ5 442 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 MMTAG2Q9BU76 263 aaKnown RBP20.87■□□□□ 0.93
PTCD3-204ENST00000418628 FAM49AQ9H0Q0 323 aaPredicted RBP20.87■□□□□ 0.93
PTCD3-204ENST00000418628 DHX33Q9H6R0 707 aaKnown RBP20.87■□□□□ 0.93
PTCD3-204ENST00000418628 FNDC1Q4ZHG4 1894 aaPredicted RBP20.87■□□□□ 0.93
PTCD3-204ENST00000418628 MYO9BQ13459 2157 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 KIAA1671Q9BY89 1806 aa20.87■□□□□ 0.93
PTCD3-204ENST00000418628 DDX11L8A8MPP1 907 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 ZBTB39O15060 712 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 NASPP49321 788 aaPredicted RBP20.86■□□□□ 0.93
PTCD3-204ENST00000418628 NPEPPSP55786 919 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 TBC1D8BQ0IIM8 1120 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 ECM1Q16610 540 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 LRIT3Q3SXY7 679 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 HABP4Q5JVS0 413 aaKnown RBP20.86■□□□□ 0.93
PTCD3-204ENST00000418628 DTHD1Q6ZMT9 781 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 DEFB128Q7Z7B8 93 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 ERMNQ8TAM6 284 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 USP28Q96RU2 1077 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 SH2D3AQ9BRG2 576 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 RAB34Q9BZG1 259 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 ANKEF1Q9NU02 776 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 LRWD1Q9UFC0 647 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 CLIC4Q9Y696 253 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 CDY2AQ9Y6F7 541 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 SQORQ9Y6N5 450 aa20.86■□□□□ 0.93
PTCD3-204ENST00000418628 PP2D1A8MPX8 630 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 RBAK-RBAKDNI3L0D1 243 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 XRCC6P12956 609 aaKnown RBP eCLIP20.85■□□□□ 0.931e-7■□□□□ 10
PTCD3-204ENST00000418628 CLCN3P51790 818 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 PLEKHG4Q58EX7 1191 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 FBXO47Q5MNV8 452 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 HYIQ5T013 277 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 POTEGQ6S5H5 508 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 DBR1Q9UK59 544 aaKnown RBP20.85■□□□□ 0.93
PTCD3-204ENST00000418628 ZDHHC9Q9Y397 364 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms