RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 ABHD8Q96I13 439 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 JPH2Q9BR39 696 aaPredicted RBP9.44□□□□□ -0.9
TRIM48-201ENST00000417545 C16orf70Q9BSU1 422 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 LRRC27Q9C0I9 530 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 C11orf49Q9H6J7 331 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 BMP2KQ9NSY1 1161 aaPredicted RBP9.44□□□□□ -0.9
TRIM48-201ENST00000417545 ANKEF1Q9NU02 776 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 PHF24Q9UPV7 400 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 MAFBQ9Y5Q3 323 aaPredicted RBP9.44□□□□□ -0.9
TRIM48-201ENST00000417545 COL1A2P08123 1366 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 IGKV6D-21A0A0A0MT36 114 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 RRN3P2A6NIE6 340 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 E9PMD0 336 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 USO1O60763 962 aaKnown RBP9.43□□□□□ -0.9
TRIM48-201ENST00000417545 EYA4O95677 639 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 MBD3O95983 291 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 SMIM10L2AP0DMW4 78 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 SMIM10L2BP0DMW5 78 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 HOXD8P13378 290 aaPredicted RBP9.43□□□□□ -0.9
TRIM48-201ENST00000417545 MCM4P33991 863 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 NKX3-2P78367 333 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 FAM160A1Q05DH4 1040 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 GRB10Q13322 594 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 GRIK4Q16099 956 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 NBPF20Q3BBV1 942 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 USP49Q70CQ1 688 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 NECAB2Q7Z6G3 386 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 CNNM3Q8NE01 707 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 SLC7A3Q8WY07 619 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 CCDC47Q96A33 483 aaKnown RBP9.43□□□□□ -0.9
TRIM48-201ENST00000417545 PCYT2Q99447 389 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 HSD17B14Q9BPX1 270 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 MMTAG2Q9BU76 263 aaKnown RBP9.43□□□□□ -0.9
TRIM48-201ENST00000417545 SEZ6LQ9BYH1 1024 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 CRISPLD2Q9H0B8 497 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 BHMT2Q9H2M3 363 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 CUEDC2Q9H467 287 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 MAGEF1Q9HAY2 307 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 USP25Q9UHP3 1055 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 PPME1Q9Y570 386 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 MROH7Q68CQ1 1323 aa9.43□□□□□ -0.9
TRIM48-201ENST00000417545 A0A087WWV3 80 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 SPDYE4A6NLX3 237 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 CTAGE5O15320 804 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 ZNF862O60290 1169 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 GADD45BO75293 160 aaPredicted RBP9.42□□□□□ -0.9
TRIM48-201ENST00000417545 TBCAO75347 108 aaKnown RBP9.42□□□□□ -0.9
TRIM48-201ENST00000417545 LYPLA2O95372 231 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 PLA2G4BP0C869 781 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 SPATA31C1P0DKV0 1188 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 XRCC6P12956 609 aaKnown RBP eCLIP9.42□□□□□ -0.9
TRIM48-201ENST00000417545 INSRRP14616 1297 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 TMOD1P28289 359 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 RFC5P40937 340 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 DNM2P50570 870 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 NDUFA8P51970 172 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 ATN1P54259 1190 aaPredicted RBP9.42□□□□□ -0.9
TRIM48-201ENST00000417545 SOX10P56693 466 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 MCM6Q14566 821 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 TMEM119Q4V9L6 283 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 HYIQ5T013 277 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 KANK3Q6NY19 840 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 GPBP1Q86WP2 473 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 METTL13Q8N6R0 699 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 RAD54LQ92698 747 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 PAWRQ96IZ0 340 aaKnown RBP9.42□□□□□ -0.9
TRIM48-201ENST00000417545 SCLT1Q96NL6 688 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 PNMA5Q96PV4 448 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 MAP7D2Q96T17 732 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 SH2D3AQ9BRG2 576 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 RNPEPQ9H4A4 650 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 ZHX3Q9H4I2 956 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 ATP6V0A4Q9HBG4 840 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 CYP26B1Q9NR63 512 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 HDAC6Q9UBN7 1215 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 TUBE1Q9UJT0 475 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 DBR1Q9UK59 544 aaKnown RBP9.42□□□□□ -0.9
TRIM48-201ENST00000417545 NRCAMQ92823 1304 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 SCN10AQ9Y5Y9 1956 aa9.42□□□□□ -0.9
TRIM48-201ENST00000417545 TMEM150BA6NC51 233 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 DCDC2CA8MYV0 355 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 M0QZ92 97 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 MAGEB2O15479 319 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 DGAT1O75907 488 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 ZNF202O95125 648 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 CYP2C9P11712 490 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 AFMP43652 599 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 NPEPPSP55786 919 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 PTPN11Q06124 597 aaPredicted RBP9.41□□□□□ -0.9
TRIM48-201ENST00000417545 CCSAPQ6IQ19 270 aaPredicted RBP9.41□□□□□ -0.9
TRIM48-201ENST00000417545 NFRKBQ6P4R8 1299 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 PADI6Q6TGC4 694 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 ANO5Q75V66 913 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 MAEAQ7L5Y9 396 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 RSPH3Q86UC2 560 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 CCDC155Q8N6L0 562 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 MCPH1Q8NEM0 835 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 DIS3LQ8TF46 1054 aaKnown RBP9.41□□□□□ -0.9
TRIM48-201ENST00000417545 PPP1R13LQ8WUF5 828 aa9.41□□□□□ -0.9
TRIM48-201ENST00000417545 LMBR1Q8WVP7 490 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms