RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CEP95Q96GE4 821 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 SGSM3Q96HU1 749 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 MOV10L1Q9BXT6 1211 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 KLC4Q9NSK0 619 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 TYW1Q9NV66 732 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 EHD2Q9NZN4 543 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 DDX25Q9UHL0 483 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 SYNPO2Q9UMS6 1093 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 PCDHA12Q9UN75 941 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 STX8Q9UNK0 236 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 NOC2LQ9Y3T9 749 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 PFASO15067 1338 aa6.26□□□□□ -1.41
CCDC88A-203ENST00000412148 WTIPA6NIX2 430 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 F8VZ95 297 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 MTA2O94776 668 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 TDP2O95551 362 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 H2AFZP0C0S5 128 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 CCDC172P0C7W6 258 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 PLA2G4BP0C869 781 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 GAP43P17677 238 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 RPA1P27694 616 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC8A1P32418 973 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 HDLBPQ00341 1268 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 PDE4CQ08493 712 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 SPIRE1Q08AE8 756 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ANKRD20A8PQ5CZ79 823 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 TBC1D9BQ66K14 1250 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ALKBH5Q6P6C2 394 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 H2AFVQ71UI9 128 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ZNF571Q7Z3V5 609 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 SH2D3CQ8N5H7 860 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 LINC00116Q8NCU8 138 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 CCT6BQ92526 530 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 DRC1Q96MC2 740 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 NUDT12Q9BQG2 462 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 BIN2Q9UBW5 565 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 PARP2Q9UGN5 583 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ARMCX3Q9UH62 379 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 DDX20Q9UHI6 824 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 COL2A1P02458 1487 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 POTEMA6NI47 508 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 PMM2O15305 246 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 MGRN1O60291 552 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 FTCDO95954 541 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 CIITAP33076 1130 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 CTNNA1P35221 906 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 MMP13P45452 471 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ADAM9Q13443 819 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 NEDD9Q14511 834 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 SLMAPQ14BN4 828 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ECM1Q16610 540 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 CYP1B1Q16678 543 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 EXOC3L4Q17RC7 722 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 FBXW10Q5XX13 1052 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 DUPD1Q68J44 220 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 MFSD5Q6N075 450 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 USP17L2Q6R6M4 530 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 DYMQ7RTS9 669 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 COL23A1Q86Y22 540 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 CACNA2D3Q8IZS8 1091 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 TGFBRAP1Q8WUH2 860 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 RFFLQ8WZ73 363 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 SLCO2A1Q92959 643 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 FAM20AQ96MK3 541 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ZNF317Q96PQ6 595 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 SETDB2Q96T68 719 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 PSMD1Q99460 953 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 POLR3CQ9BUI4 534 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 DHX36Q9H2U1 1008 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 JMJD4Q9H9V9 463 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 NLRC4Q9NPP4 1024 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ZDHHC18Q9NUE0 388 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 PCYOX1Q9UHG3 505 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 ADAMTS1Q9UHI8 967 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 MCM8Q9UJA3 840 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 HDAC9Q9UKV0 1011 aa6.25□□□□□ -1.41
CCDC88A-203ENST00000412148 CFAP73A6NFT4 308 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ZSCAN5CA6NGD5 496 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 MIF4GDA9UHW6 222 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 KCNK3O14649 394 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ZBTB5O15062 677 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 TTLL1O95922 423 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 DRD4P21917 467 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ATP2B4P23634 1241 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 MAP2K2P36507 400 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 MATR3P43243 847 aaKnown RBP eCLIP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 RAPGEF1Q13905 1077 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 GIT2Q14161 759 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 PPP2R5AQ15172 486 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ZNF568Q3ZCX4 644 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ARSHQ5FYA8 562 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 GKAP1Q5VSY0 366 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 C11orf63Q6NUN7 778 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 BICDL1Q6ZP65 573 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 CCDC121Q6ZUS5 278 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 TMC4Q7Z404 712 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 PIGWQ7Z7B1 504 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 TXNRD3Q86VQ6 643 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 FUKQ8N0W3 1084 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 FAM133AQ8N9E0 248 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms