RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 MAP3K10Q02779 954 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 CERKLQ49MI3 558 aaPredicted RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 CCDC40Q4G0X9 1142 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 HERC4Q5GLZ8 1057 aaPredicted RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 SYDE2Q5VT97 1194 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 STYK1Q6J9G0 422 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 CCDC70Q6NSX1 233 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 CACNA2D4Q7Z3S7 1137 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 NT5DC3Q86UY8 548 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 SFR1Q86XK3 245 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 C12orf56Q8IXR9 622 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 SEPT12Q8IYM1 358 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 FAM76AQ8TAV0 307 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 CAGE1Q8TC20 777 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 ARL8AQ96BM9 186 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 WDR18Q9BV38 432 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 RUSC1Q9BVN2 902 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 RANBP17Q9H2T7 1088 aaKnown RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 LUC7LQ9NQ29 371 aaKnown RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 MTMR7Q9Y216 660 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 DIS3Q9Y2L1 958 aaKnown RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 COL4A5P29400 1685 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 F5H6K3 240 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 C6orf229H3BNL8 230 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 MAPK13O15264 365 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 BUB1O43683 1085 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 NR3C1P04150 777 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 VIL1P09327 827 aaKnown RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 MAPTP10636 758 aaKnown RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 ACTN1P12814 892 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 PAFAH1B1P43034 410 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 MAGEA9P43362 315 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 EIF6P56537 245 aaKnown RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 SLC7A5Q01650 507 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 KLRC3Q07444 240 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 KLHL30Q0D2K2 578 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 CUL1Q13616 776 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 KIF22Q14807 665 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 C8orf74Q6P047 294 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 SND1Q7KZF4 910 aaKnown RBP eCLIP4.23□□□□□ -1.733e-12■■■■□ 21.6
RTN4-209ENST00000405240 FAM133AQ8N9E0 248 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 ERMNQ8TAM6 284 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 LNX1Q8TBB1 728 aaPredicted RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 MASTLQ96GX5 879 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 EIF2AK1Q9BQI3 630 aaKnown RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 CRACR2AQ9BSW2 395 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 DEF6Q9H4E7 631 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 TMBIM4Q9HC24 238 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 NLRC4Q9NPP4 1024 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 SEL1LQ9UBV2 794 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 DNM3Q9UQ16 869 aa4.23□□□□□ -1.73
RTN4-209ENST00000405240 COL11A1P12107 1806 aaPredicted RBP4.23□□□□□ -1.73
RTN4-209ENST00000405240 GOLGA6CA6NDK9 693 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 TULP1O00294 542 aaPredicted RBP4.22□□□□□ -1.73
RTN4-209ENST00000405240 RAD51CO43502 376 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 MTA2O94776 668 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 NDUFB10O96000 172 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 GOLGA6DP0CG33 693 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 SLURP2P0DP57 97 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 GUCY2CP25092 1073 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 CXCR5P32302 372 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 PDE6BP35913 854 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 ERVK-9P63128 1117 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 PAK2Q13177 524 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 ITGB3BPQ13352 177 aaPredicted RBP4.22□□□□□ -1.73
RTN4-209ENST00000405240 PPP2R5AQ15172 486 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 UAP1Q16222 522 aaPredicted RBP4.22□□□□□ -1.73
RTN4-209ENST00000405240 KIAA1755Q5JYT7 1200 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 ZNF720Q7Z2F6 126 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 FBXO11Q86XK2 927 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 C3orf20Q8ND61 904 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 STK33Q9BYT3 514 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 ZC3H12CQ9C0D7 883 aaKnown RBP4.22□□□□□ -1.73
RTN4-209ENST00000405240 TAF1DQ9H5J8 278 aaPredicted RBP4.22□□□□□ -1.73
RTN4-209ENST00000405240 GOLGA6AQ9NYA3 693 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 ARMCX3Q9UH62 379 aaPredicted RBP4.22□□□□□ -1.73
RTN4-209ENST00000405240 ODF2LQ9ULJ1 636 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 PCDHAC2Q9Y5I4 1007 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 DOCK1Q14185 1865 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 CNTNAP1P78357 1384 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 PFASO15067 1338 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 A0A1W2PRG0 241 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 RSPH10B2B2RC85 870 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 UBAP1LF5GYI3 381 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 CCDC188H7C350 402 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 PAEPP09466 180 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 TMEM253P0C7T8 217 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 RSPH10BP0C881 870 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 FERP16591 822 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 RFX1P22670 979 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 TNNT3P45378 269 aaPredicted RBP4.22□□□□□ -1.73
RTN4-209ENST00000405240 MAPK7Q13164 816 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 EXOC3L4Q17RC7 722 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 KIAA0753Q2KHM9 967 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 ZNF568Q3ZCX4 644 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 YTHDF3Q7Z739 585 aaKnown RBP4.22□□□□□ -1.73
RTN4-209ENST00000405240 NELFCDQ8IXH7 590 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 EFCAB13Q8IY85 973 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 ANKRD13CQ8N6S4 541 aa4.22□□□□□ -1.73
RTN4-209ENST00000405240 KCNN1Q92952 543 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms