RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MYO7AQ13402 2215 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 CCDC194A0A1B0GVG4 234 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 FAM86B1E9PN63 330 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 WNT7AO00755 349 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 MAFGO15525 162 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 F13A1P00488 732 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 MMP3P08254 477 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 FAM86B2P0C5J1 330 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 TGFB3P10600 412 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 FOSL2P15408 326 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 GCFC2P16383 781 aaKnown RBP10.41□□□□□ -0.74
VPS53-203ENST00000401468 ITGB5P18084 799 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 CPT1AP50416 773 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 NKX3-2P78367 333 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 SP2Q02086 613 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 SP4Q02446 784 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 SEMA3FQ13275 785 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 CCDC85BQ15834 202 aaPredicted RBP10.41□□□□□ -0.74
VPS53-203ENST00000401468 INF2Q27J81 1249 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 CEP55Q53EZ4 464 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 RILPL1Q5EBL4 403 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 MYSM1Q5VVJ2 828 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 GDF6Q6KF10 455 aaPredicted RBP10.41□□□□□ -0.74
VPS53-203ENST00000401468 CCDC62Q6P9F0 684 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 SPRED2Q7Z698 418 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 MAFAQ8NHW3 353 aaPredicted RBP10.41□□□□□ -0.74
VPS53-203ENST00000401468 WNT8BQ93098 351 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 GPRASP2Q96D09 838 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 NAP1L4Q99733 375 aaKnown RBP10.41□□□□□ -0.74
VPS53-203ENST00000401468 PRDM12Q9H4Q4 367 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 IL23AQ9NPF7 189 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 JADE2Q9NQC1 790 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 RTEL1Q9NZ71 1219 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 PKD2L1Q9P0L9 805 aa10.41□□□□□ -0.74
VPS53-203ENST00000401468 YBX2Q9Y2T7 364 aaKnown RBP10.41□□□□□ -0.74
VPS53-203ENST00000401468 BRWD1Q9NSI6 2320 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 VPS37CA5D8V6 355 aaPredicted RBP10.4□□□□□ -0.74
VPS53-203ENST00000401468 SPATA31C2B4DYI2 1134 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 RFXAPO00287 272 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 GCGRP47871 477 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 NUCB2P80303 420 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 SMAD3P84022 425 aaKnown RBP10.4□□□□□ -0.74
VPS53-203ENST00000401468 SETQ01105 290 aaPredicted RBP10.4□□□□□ -0.74
VPS53-203ENST00000401468 TCTN1Q2MV58 587 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 KCNV1Q6PIU1 500 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 LIAT1Q6ZQX7 453 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 KAT2BQ92831 832 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 TIFAQ96CG3 184 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 UIMC1Q96RL1 719 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 MXRA8Q9BRK3 442 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 KCNMB3Q9NPA1 279 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 POLR3EQ9NVU0 708 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 MRVI1Q9Y6F6 885 aa10.4□□□□□ -0.74
VPS53-203ENST00000401468 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.39□□□□□ -0.75
VPS53-203ENST00000401468 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.39□□□□□ -0.75
VPS53-203ENST00000401468 TBX3O15119 743 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 FIBPO43427 364 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 CABYRO75952 493 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 ARHGEF15O94989 841 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 GGPS1O95749 300 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 GH1P01241 217 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 FGBP02675 491 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 ATL3Q6DD88 541 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 MCTP1Q6DN14 999 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 B3GNT9Q6UX72 402 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 TRIM67Q6ZTA4 783 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 ZNF598Q86UK7 904 aaKnown RBP10.39□□□□□ -0.75
VPS53-203ENST00000401468 MICALL1Q8N3F8 863 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 C4orf32Q8N8J7 132 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 CYP2W1Q8TAV3 490 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 ETNPPLQ8TBG4 499 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 DHX38Q92620 1227 aaKnown RBP10.39□□□□□ -0.75
VPS53-203ENST00000401468 CDHR1Q96JP9 859 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 CTAGE1Q96RT6 745 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 SENP7Q9BQF6 1050 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 ZNF576Q9H609 170 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 HDAC6Q9UBN7 1215 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 DDX41Q9UJV9 622 aaKnown RBP10.39□□□□□ -0.75
VPS53-203ENST00000401468 NOD1Q9Y239 953 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 Q9Y3F1 56 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 ARID2Q68CP9 1835 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 PIEZO1Q92508 2521 aa10.39□□□□□ -0.75
VPS53-203ENST00000401468 NFASCO94856 1347 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 A6NJR5 290 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 LAD1O00515 517 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 NKRFO15226 690 aaKnown RBP eCLIP10.38□□□□□ -0.75
VPS53-203ENST00000401468 SLC37A4O43826 429 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 TDP2O95551 362 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 KCNA2P16389 499 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 UBA1P22314 1058 aaKnown RBP10.38□□□□□ -0.75
VPS53-203ENST00000401468 NASPP49321 788 aaPredicted RBP10.38□□□□□ -0.75
VPS53-203ENST00000401468 MTMR1Q13613 665 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 PTGISQ16647 500 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 HSDL1Q3SXM5 330 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 GNPTABQ3T906 1256 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 TTC38Q5R3I4 469 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 FAM117BQ6P1L5 589 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 NLRX1Q86UT6 975 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 FERMT3Q86UX7 667 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 TRIM50Q86XT4 487 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms