RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PTPRKQ15262 1439 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 CSPG5O95196 566 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 NT5C2P49902 561 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 ZC4H2Q9NQZ6 224 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 CYP26B1Q9NR63 512 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 NOVA2Q9UNW9 492 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 SEC31AO94979 1220 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 DDX5P17844 614 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 SMARCA1P28370 1054 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 CAV1Q03135 178 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 SYT2Q8N9I0 419 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 NLRP4Q96MN2 994 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 COPRSQ9NQ92 184 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 CDV3Q9UKY7 258 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 G3BP2Q9UN86 482 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 APOBEC2Q9Y235 224 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 SUGT1Q9Y2Z0 365 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 SRPRBQ9Y5M8 271 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 LOC102724428A0A0B4J2F2 783 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 BNIP3LO60238 219 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 MYL3P08590 195 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 PLCG1P19174 1290 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 RAP1GDS1P52306 607 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 SIK1P57059 783 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 GRAMD1BQ3KR37 738 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 HABP4Q5JVS0 413 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 ASNSD1Q9NWL6 643 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 PALD1Q9ULE6 856 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 NR1H3Q13133 447 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 E2F5Q15329 346 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 GTPBP10A4D1E9 387 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 SOWAHDA6NJG2 315 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 OCM2P0CE71 109 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 OCMP0CE72 109 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 URGCPQ8TCY9 931 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 KLHL8Q9P2G9 620 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 IL6STP40189 918 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 TTC8Q8TAM2 541 aa13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 NR1H4Q96RI1 486 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-204ENST00000389857 CCNE1P24864 410 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 COPS2P61201 443 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 ZC3H12BQ5HYM0 836 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 LRRC31Q6UY01 552 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 KIAA1586Q9HCI6 787 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 MOSPD1Q9UJG1 213 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 A0A087WUV0 522 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 CCDC151A5D8V7 595 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 CREB3O43889 395 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 TADA3O75528 432 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 NDUFA10O95299 355 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 SLITRK6Q9H5Y7 841 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 SERPINB2P05120 415 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 TSPY1Q01534 308 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 ING2Q9H160 280 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 STRIP2Q9ULQ0 834 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 KDM5DQ9BY66 1539 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 GUCY2CP25092 1073 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 TMPRSS15P98073 1019 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 ZNF667Q5HYK9 610 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 FAM167AQ96KS9 214 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 SNX5Q9Y5X3 404 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 SH2B2O14492 632 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 MARK3P27448 753 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 COA7Q96BR5 231 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 AP1M1Q9BXS5 423 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 TRPV6Q9H1D0 765 aa13.69□□□□□ -0.22
CCDC88C-204ENST00000389857 MAN1A2O60476 641 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 KRT38O76015 456 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 CALB1P05937 261 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 DPCR1Q3MIW9 517 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 TTC30AQ86WT1 665 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ENOX1Q8TC92 643 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ZBED2Q9BTP6 218 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ASPSCR1Q9BZE9 553 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 RNF123Q5XPI4 1314 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 KCNA4P22459 653 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 MXD4Q14582 209 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 TMEM259Q4ZIN3 620 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ACRBPQ8NEB7 543 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 NAF1Q96HR8 494 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 STAP2Q9UGK3 403 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 CCDC188H7C350 402 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 NNMTP40261 264 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 HADHAP40939 763 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 DYNLL1P63167 89 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 KLHL38Q2WGJ6 581 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ARL6IP4Q66PJ3 421 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 OR9Q1Q8NGQ5 310 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 EPAS1Q99814 870 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 SAYSD1Q9NPB0 183 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 POLE2P56282 527 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 NSUN7Q8NE18 718 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 DDX17Q92841 729 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 PPP1R16BQ96T49 567 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 LRRC23Q53EV4 343 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 DCAF4Q8WV16 495 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 PITPNM3Q9BZ71 974 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 NDST4Q9H3R1 872 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ATP6V0A4Q9HBG4 840 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 USP17L3A6NCW0 530 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms