RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 AFPP02771 609 aaKnown RBP14.69□□□□□ -0.06
CCDC3-202ENST00000378839 PRLRP16471 622 aa14.69□□□□□ -0.06
CCDC3-202ENST00000378839 SLC7A5Q01650 507 aa14.69□□□□□ -0.06
CCDC3-202ENST00000378839 NAB2Q15742 525 aa14.69□□□□□ -0.06
CCDC3-202ENST00000378839 ARHGAP27Q6ZUM4 889 aa14.69□□□□□ -0.06
CCDC3-202ENST00000378839 TMOD2Q9NZR1 351 aa14.69□□□□□ -0.06
CCDC3-202ENST00000378839 PCDHB13Q9Y5F0 798 aa14.69□□□□□ -0.06
CCDC3-202ENST00000378839 NFIBO00712 420 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 ERLIN1O75477 346 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 CKAP4Q07065 602 aaKnown RBP14.68□□□□□ -0.06
CCDC3-202ENST00000378839 CCNI2Q6ZMN8 369 aaPredicted RBP14.68□□□□□ -0.06
CCDC3-202ENST00000378839 ZBED3Q96IU2 234 aaPredicted RBP14.68□□□□□ -0.06
CCDC3-202ENST00000378839 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.68□□□□□ -0.06
CCDC3-202ENST00000378839 GOLPH3Q9H4A6 298 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 OLFML3Q9NRN5 406 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 PKD2L1Q9P0L9 805 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 TARSL2A2RTX5 802 aaKnown RBP14.68□□□□□ -0.06
CCDC3-202ENST00000378839 PTGER2P43116 358 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 MATR3P43243 847 aaKnown RBP eCLIP14.68□□□□□ -0.06
CCDC3-202ENST00000378839 KLHL30Q0D2K2 578 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 KCTD19Q17RG1 926 aaPredicted RBP14.68□□□□□ -0.06
CCDC3-202ENST00000378839 DEFB132Q7Z7B7 95 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 DAW1Q8N136 415 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 MYCT1Q8N699 235 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 PSMD1Q99460 953 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 TUFT1Q9NNX1 390 aa14.68□□□□□ -0.06
CCDC3-202ENST00000378839 PHF20L1A8MW92 1017 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 DDX39AO00148 427 aaKnown RBP14.67□□□□□ -0.06
CCDC3-202ENST00000378839 PRELPP51888 382 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 ASIC2Q16515 512 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 MMGT1Q8N4V1 131 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 ZNF577Q9BSK1 485 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 RBM12Q9NTZ6 932 aaKnown RBP14.67□□□□□ -0.06
CCDC3-202ENST00000378839 ADAM21Q9UKJ8 722 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 WNT10BO00744 389 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 CALUO43852 315 aaPredicted RBP14.67□□□□□ -0.06
CCDC3-202ENST00000378839 GAS7O60861 476 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 TBCAO75347 108 aaKnown RBP14.67□□□□□ -0.06
CCDC3-202ENST00000378839 SYF2O95926 243 aaKnown RBP14.67□□□□□ -0.06
CCDC3-202ENST00000378839 DNA2P51530 1060 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 JAM2P57087 298 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 GRIPAP1Q4V328 841 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 CLEC4DQ8WXI8 215 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 NOX5Q96PH1 765 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 PLCB1Q9NQ66 1216 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 FAN1Q9Y2M0 1017 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 FAM170AA1A519 330 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 GRID2IPA4D2P6 1211 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 TBC1D12O60347 775 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 XRCC5P13010 732 aaKnown RBP14.67□□□□□ -0.06
CCDC3-202ENST00000378839 SPP2Q13103 211 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 MAPK7Q13164 816 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 EXOC3L4Q17RC7 722 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 ZNF720Q7Z2F6 126 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 RIN2Q8WYP3 895 aaPredicted RBP14.67□□□□□ -0.06
CCDC3-202ENST00000378839 WDR11Q9BZH6 1224 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 NUCKS1Q9H1E3 243 aaKnown RBP14.67□□□□□ -0.06
CCDC3-202ENST00000378839 NENFQ9UMX5 172 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 HYOU1Q9Y4L1 999 aa14.67□□□□□ -0.06
CCDC3-202ENST00000378839 TISP43B9A030 160 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 EPS15P42566 896 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 ZNF131P52739 623 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 CXCL9Q07325 125 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 KIAA0753Q2KHM9 967 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 TCERG1LQ5VWI1 586 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 OGFOD1Q8N543 542 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 MSL3Q8N5Y2 521 aaKnown RBP14.66□□□□□ -0.06
CCDC3-202ENST00000378839 CHURC1Q8WUH1 139 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 RPGRIP1Q96KN7 1286 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 STK32BQ9NY57 414 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 HPCAL4Q9UM19 191 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 FER1L6Q2WGJ9 1857 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 DHX15O43143 795 aaKnown RBP14.66□□□□□ -0.06
CCDC3-202ENST00000378839 PHACTR2O75167 634 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 MAP3K10Q02779 954 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 IQCEQ6IPM2 695 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 RNF10Q8N5U6 811 aaKnown RBP14.66□□□□□ -0.06
CCDC3-202ENST00000378839 UPF1Q92900 1129 aaKnown RBP eCLIP14.66□□□□□ -0.06
CCDC3-202ENST00000378839 SH2D3AQ9BRG2 576 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 LXNQ9BS40 222 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 VPS18Q9P253 973 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 FRMPD4Q14CM0 1322 aa14.66□□□□□ -0.06
CCDC3-202ENST00000378839 TMEM150BA6NC51 233 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 AGPSO00116 658 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 IPO5O00410 1097 aaKnown RBP14.65□□□□□ -0.06
CCDC3-202ENST00000378839 LRRN2O75325 713 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 FAM13AO94988 1023 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 HSD17B4P51659 736 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 ITGB3BPQ13352 177 aaPredicted RBP14.65□□□□□ -0.06
CCDC3-202ENST00000378839 PTPROQ16827 1216 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 CBWD6Q4V339 395 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 CBWD3Q5JTY5 395 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 CBWD5Q5RIA9 395 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 RTKN2Q8IZC4 609 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 ALS2CR12Q96Q35 445 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 ZNF341Q9BYN7 854 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 PLEKHA4Q9H4M7 779 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 BCS1LQ9Y276 419 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 MRPL11Q9Y3B7 192 aaKnown RBP14.65□□□□□ -0.06
CCDC3-202ENST00000378839 PCDHGC5Q9Y5F6 944 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms