RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 IPO9Q96P70 1041 aaKnown RBP13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 FBXO2Q9UK22 296 aaPredicted RBP13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 KIAA1024Q9UPX6 916 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 STBD1O95210 358 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 RPA1P27694 616 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 THPOP40225 353 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 UBA7P41226 1012 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 XKR9Q5GH70 373 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 HAUS3Q68CZ6 603 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 C4orf19Q8IY42 314 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 LRRC71Q8N4P6 559 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 DNAJB3Q8WWF6 145 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 SCLYQ96I15 445 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 FAM167AQ96KS9 214 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 CEP170P1Q96L14 293 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 PPP1R16BQ96T49 567 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 PANK2Q9BZ23 570 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 DDX19AQ9NUU7 478 aaKnown RBP13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 CFAP45Q9UL16 551 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 TBX21Q9UL17 535 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 GINS2Q9Y248 185 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 ATP6V1DQ9Y5K8 247 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 RRN3P2A6NIE6 340 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 ME1P48163 572 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 ADAM17P78536 824 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 TBC1D8BQ0IIM8 1120 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 MTHFD1LQ6UB35 978 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 SERINC5Q86VE9 423 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 DHX38Q92620 1227 aaKnown RBP13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 ZNF668Q96K58 619 aaPredicted RBP13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 CCDC43Q96MW1 224 aaKnown RBP13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 MMTAG2Q9BU76 263 aaKnown RBP13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 SEZ6LQ9BYH1 1024 aa13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 SRPRBQ9Y5M8 271 aaKnown RBP13.11□□□□□ -0.31
DEPDC4-202ENST00000378244 ALPK3Q96L96 1907 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 DKC1O60832 514 aaKnown RBP eCLIP13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 HOXC8P31273 242 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 ZNF484Q5JVG2 852 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 KRI1Q8N9T8 703 aaKnown RBP13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 BADQ92934 168 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 NOC4LQ9BVI4 516 aaKnown RBP13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 CYP26B1Q9NR63 512 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 MYH9P35579 1960 aaKnown RBP13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 TRIP12Q14669 1992 aaPredicted RBP13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 E9PMD0 336 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 CLCN3P51790 818 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 KRT85P78386 507 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 KARSQ15046 597 aaKnown RBP13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 MAEAQ7L5Y9 396 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 OTUD6AQ7L8S5 288 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 CABP7Q86V35 215 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 NEK9Q8TD19 979 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 CDK5RAP3Q96JB5 506 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 SPATA32Q96LK8 384 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 POLR3CQ9BUI4 534 aaPredicted RBP13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 POLD4Q9HCU8 107 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 TUFT1Q9NNX1 390 aa13.1□□□□□ -0.31
DEPDC4-202ENST00000378244 MBLAC1A4D2B0 266 aaPredicted RBP13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 C22orf31O95567 290 aa13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 YEATS4O95619 227 aa13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 CKBP12277 381 aa13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 LONP1P36776 959 aaKnown RBP13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 PTK7Q13308 1070 aa13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 DRP2Q13474 957 aa13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 ZNF618Q5T7W0 954 aa13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 EFCAB12Q6NXP0 572 aa13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 SYMPKQ92797 1274 aaKnown RBP13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 NIFKQ9BYG3 293 aaKnown RBP13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 BHMT2Q9H2M3 363 aa13.09□□□□□ -0.31
DEPDC4-202ENST00000378244 KIAA0355O15063 1070 aa13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 SSBP05455 408 aaKnown RBP eCLIP13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 CSF2RAP15509 400 aa13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 POLGP54098 1239 aaPredicted RBP13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 DHX8Q14562 1220 aaKnown RBP13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 TARBP2Q15633 366 aaKnown RBP13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 KCNK18Q7Z418 384 aa13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 PDILTQ8N807 584 aa13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 RETREG2Q8NC44 543 aa13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 AK8Q96MA6 479 aa13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 NACC1Q96RE7 527 aa13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 LBHD1Q9BQE6 289 aaPredicted RBP13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 WNT8AQ9H1J5 351 aa13.08□□□□□ -0.31
DEPDC4-202ENST00000378244 KAT6AQ92794 2004 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 TIMP1P01033 207 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 VTNP04004 478 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 RARRES1P49788 294 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 BFSP2Q13515 415 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 TAF2Q6P1X5 1199 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 DEFB128Q7Z7B8 93 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 KCNG4Q8TDN1 519 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 LEO1Q8WVC0 666 aaPredicted RBP13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 SLC7A3Q8WY07 619 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 CHMP5Q9NZZ3 219 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 PCDHA7Q9UN72 937 aa13.08□□□□□ -0.32
DEPDC4-202ENST00000378244 USO1O60763 962 aaKnown RBP13.07□□□□□ -0.32
DEPDC4-202ENST00000378244 PPP6R2O75170 966 aa13.07□□□□□ -0.32
DEPDC4-202ENST00000378244 GRB10Q13322 594 aa13.07□□□□□ -0.32
DEPDC4-202ENST00000378244 ATL3Q6DD88 541 aa13.07□□□□□ -0.32
DEPDC4-202ENST00000378244 KIAA0319LQ8IZA0 1049 aa13.07□□□□□ -0.32
DEPDC4-202ENST00000378244 TMEM143Q96AN5 459 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms