RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 KCNV1Q6PIU1 500 aa13.84□□□□□ -0.19
VRK3-202ENST00000377011 SHC4Q6S5L8 630 aa13.84□□□□□ -0.19
VRK3-202ENST00000377011 NLRX1Q86UT6 975 aa13.84□□□□□ -0.19
VRK3-202ENST00000377011 ZNF579Q8NAF0 562 aaKnown RBP13.84□□□□□ -0.19
VRK3-202ENST00000377011 KIF18AQ8NI77 898 aa13.84□□□□□ -0.19
VRK3-202ENST00000377011 OSBPL7Q9BZF2 842 aa13.84□□□□□ -0.19
VRK3-202ENST00000377011 AGO4Q9HCK5 861 aaKnown RBP13.84□□□□□ -0.19
VRK3-202ENST00000377011 IFNKQ9P0W0 207 aa13.84□□□□□ -0.19
VRK3-202ENST00000377011 PRKAG2Q9UGJ0 569 aa13.84□□□□□ -0.19
VRK3-202ENST00000377011 DDX39AO00148 427 aaKnown RBP13.83□□□□□ -0.2
VRK3-202ENST00000377011 DHX15O43143 795 aaKnown RBP13.83□□□□□ -0.2
VRK3-202ENST00000377011 PPFIA4O75335 1185 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 SMC2O95347 1197 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 CCNE2O96020 404 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 FOSP01100 380 aaPredicted RBP13.83□□□□□ -0.2
VRK3-202ENST00000377011 GPNMBQ14956 572 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 RILPL1Q5EBL4 403 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 NOSTRINQ8IVI9 506 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 KRI1Q8N9T8 703 aaKnown RBP13.83□□□□□ -0.2
VRK3-202ENST00000377011 TSC1Q92574 1164 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 SENP7Q9BQF6 1050 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 PHF20Q9BVI0 1012 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 RNPEPQ9H4A4 650 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 OGFRQ9NZT2 677 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 PCDHA4Q9UN74 947 aa13.83□□□□□ -0.2
VRK3-202ENST00000377011 MMP1P03956 469 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 CYP3A4P08684 503 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 TCF7P36402 384 aaPredicted RBP13.82□□□□□ -0.2
VRK3-202ENST00000377011 FANCCQ00597 558 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 NEDD9Q14511 834 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 ARID5BQ14865 1188 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 BRDTQ58F21 947 aaPredicted RBP13.82□□□□□ -0.2
VRK3-202ENST00000377011 CT47A1Q5JQC4 288 aaPredicted RBP13.82□□□□□ -0.2
VRK3-202ENST00000377011 NFRKBQ6P4R8 1299 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 KRBA2Q6ZNG9 492 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 TDHQ8IZJ6 230 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 TRIML1Q8N9V2 468 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 LBHD1Q9BQE6 289 aaPredicted RBP13.82□□□□□ -0.2
VRK3-202ENST00000377011 HIPK3Q9H422 1215 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 SH3GLB2Q9NR46 395 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 GTF2IRD1Q9UHL9 959 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 DACH1Q9UI36 760 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 CEP131Q9UPN4 1083 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 MROH7Q68CQ1 1323 aa13.82□□□□□ -0.2
VRK3-202ENST00000377011 WNT7AO00755 349 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 TDP2O95551 362 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 ZSCAN20P17040 1043 aaPredicted RBP13.81□□□□□ -0.2
VRK3-202ENST00000377011 MARCKSP29966 332 aaPredicted RBP13.81□□□□□ -0.2
VRK3-202ENST00000377011 GNA11P29992 359 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 NR5A1Q13285 461 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 TCTN1Q2MV58 587 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 FAM109BQ6ICB4 259 aaPredicted RBP13.81□□□□□ -0.2
VRK3-202ENST00000377011 MFSD5Q6N075 450 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 KANK3Q6NY19 840 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 TMC6Q7Z403 805 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 BLIDQ8IZY5 108 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 TBCKQ8TEA7 893 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.81□□□□□ -0.21e-6■■■□□ 15.1
VRK3-202ENST00000377011 KCNH3Q9ULD8 1083 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 H3BRB1 525 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 NOP56O00567 594 aaKnown RBP13.81□□□□□ -0.2
VRK3-202ENST00000377011 KPNA6O60684 536 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 MARK3P27448 753 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 PTGISQ16647 500 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 PRR16Q569H4 304 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 NT5DC1Q5TFE4 455 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 ARMCX5Q6P1M9 558 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 TRAF7Q6Q0C0 670 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 CCDC148Q8NFR7 591 aa13.81□□□□□ -0.2
VRK3-202ENST00000377011 ERCC4Q92889 916 aaPredicted RBP13.81□□□□□ -0.2
VRK3-202ENST00000377011 TUT1Q9H6E5 874 aaKnown RBP13.81□□□□□ -0.2
VRK3-202ENST00000377011 WDR81Q562E7 1941 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 PRUNE2Q8WUY3 3088 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 A0A087WWV3 80 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 USP27XA6NNY8 438 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 TLR3O15455 904 aaKnown RBP13.8□□□□□ -0.2
VRK3-202ENST00000377011 TREHO43280 583 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 SMIM10L2AP0DMW4 78 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 SMIM10L2BP0DMW5 78 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 ZNF76P36508 570 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 ACTR2P61160 394 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 FPGSQ05932 587 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 INF2Q27J81 1249 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 TRIM71Q2Q1W2 868 aaKnown RBP13.8□□□□□ -0.2
VRK3-202ENST00000377011 SESTD1Q86VW0 696 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 DAGLBQ8NCG7 672 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 CNNM3Q8NE01 707 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 CCDC12Q8WUD4 166 aaPredicted RBP13.8□□□□□ -0.2
VRK3-202ENST00000377011 TNFRSF25Q93038 417 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 CCDC34Q96HJ3 373 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 HSD3B7Q9H2F3 369 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 L2HGDHQ9H9P8 463 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 JPH1Q9HDC5 661 aaPredicted RBP13.8□□□□□ -0.2
VRK3-202ENST00000377011 SETD4Q9NVD3 440 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 CXXC1Q9P0U4 656 aaPredicted RBP13.8□□□□□ -0.2
VRK3-202ENST00000377011 TANC1Q9C0D5 1861 aa13.8□□□□□ -0.2
VRK3-202ENST00000377011 BIN1O00499 593 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 MSH4O15457 936 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 SLC37A4O43826 429 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 KIF20AO95235 890 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms