RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 LINC01599Q8WXQ3 324 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 FAM167AQ96KS9 214 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 TEKT3Q9BXF9 490 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 FTHL17Q9BXU8 183 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 PADI3Q9ULW8 664 aa24.53■■□□□ 1.52
CCDC28B-201ENST00000373602 PSMD10O75832 226 aa24.52■■□□□ 1.52
CCDC28B-201ENST00000373602 CTDNEP1O95476 244 aa24.52■■□□□ 1.52
CCDC28B-201ENST00000373602 SFNP31947 248 aa24.52■■□□□ 1.52
CCDC28B-201ENST00000373602 SKIV2LQ15477 1246 aaKnown RBP24.52■■□□□ 1.52
CCDC28B-201ENST00000373602 GJA10Q969M2 543 aa24.52■■□□□ 1.52
CCDC28B-201ENST00000373602 RC3H2Q9HBD1 1191 aaKnown RBP24.52■■□□□ 1.52
CCDC28B-201ENST00000373602 CEP131Q9UPN4 1083 aa24.52■■□□□ 1.52
CCDC28B-201ENST00000373602 TTC3P53804 2025 aa24.51■■□□□ 1.51
CCDC28B-201ENST00000373602 XBP1P17861 261 aa24.51■■□□□ 1.51
CCDC28B-201ENST00000373602 JAK3P52333 1124 aa24.51■■□□□ 1.51
CCDC28B-201ENST00000373602 PAK2Q13177 524 aa24.51■■□□□ 1.51
CCDC28B-201ENST00000373602 EPC2Q52LR7 807 aa24.51■■□□□ 1.51
CCDC28B-201ENST00000373602 TRMT1LQ7Z2T5 733 aaKnown RBP24.51■■□□□ 1.51
CCDC28B-201ENST00000373602 RTN4RL1Q86UN2 441 aaPredicted RBP24.51■■□□□ 1.51
CCDC28B-201ENST00000373602 UNC45AQ9H3U1 944 aa24.51■■□□□ 1.51
CCDC28B-201ENST00000373602 CHMP2AO43633 222 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 ZNF862O60290 1169 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 ME3Q16798 604 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 INF2Q27J81 1249 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 B3GNT9Q6UX72 402 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 FAM43BQ6ZT52 329 aaPredicted RBP24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 TMEM192Q8IY95 271 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 RDM1Q8NG50 284 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 ETNPPLQ8TBG4 499 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 NRBP2Q9NSY0 501 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 ORC3Q9UBD5 711 aaPredicted RBP24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 LOXHD1Q8IVV2 1947 aa24.5■■□□□ 1.51
CCDC28B-201ENST00000373602 WDR81Q562E7 1941 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 EVPLQ92817 2033 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 MAGEB2O15479 319 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 DTNBO60941 627 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 OATP04181 439 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 CRIPAKQ8N1N5 446 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 FIBCD1Q8N539 461 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 ZNF689Q96CS4 500 aaPredicted RBP24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 TMX1Q9H3N1 280 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 CDHR5Q9HBB8 845 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 GJB4Q9NTQ9 266 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 GINS2Q9Y248 185 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 TRANK1O15050 2925 aa24.49■■□□□ 1.51
CCDC28B-201ENST00000373602 CCDC194A0A1B0GVG4 234 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 SEC24BO95487 1268 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 PRKCEQ02156 737 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 UGCGQ16739 394 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 TMEM266Q2M3C6 531 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 MIER3Q7Z3K6 550 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 ADGRA3Q8IWK6 1321 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 METTL13Q8N6R0 699 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 NECAB1Q8N987 351 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 WASF1Q92558 559 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 GTF3C6Q969F1 213 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 ERVK-5Q9HDB9 667 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 DDX25Q9UHL0 483 aaKnown RBP24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 COG5Q9UP83 839 aa24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 NOC2LQ9Y3T9 749 aaKnown RBP24.48■■□□□ 1.51
CCDC28B-201ENST00000373602 H3BNC9 293 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 RPS6KA5O75582 802 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 DGKIO75912 1065 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 LARGE1O95461 756 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 FDPSP14324 419 aaKnown RBP24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 NEK4P51957 841 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 TFF2Q03403 129 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 LETM2Q2VYF4 491 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 LINC01465Q8N7H1 131 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 OXER1Q8TDS5 423 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 TMEM40Q8WWA1 233 aa24.47■■□□□ 1.51
CCDC28B-201ENST00000373602 SLC37A4O43826 429 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 GPR32O75388 356 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 LINC00271P0C7V0 271 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 CRYBB1P53674 252 aaPredicted RBP24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 NFX1Q12986 1120 aaKnown RBP24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 GPM6BQ13491 265 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 AAK1Q2M2I8 961 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 KIZQ2M2Z5 673 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 ODR4Q5SWX8 454 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 PPP4R3AQ6IN85 833 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 NEK8Q86SG6 692 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 NPAS4Q8IUM7 802 aa24.46■■□□□ 1.51
CCDC28B-201ENST00000373602 RALGAPA2Q2PPJ7 1873 aa24.45■■□□□ 1.51
CCDC28B-201ENST00000373602 NLRC5Q86WI3 1866 aa24.45■■□□□ 1.51
CCDC28B-201ENST00000373602 VTNP04004 478 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 CLCN3P51790 818 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 BTG3Q14201 252 aaPredicted RBP24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 PTPROQ16827 1216 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 EFCAB12Q6NXP0 572 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 PIK3AP1Q6ZUJ8 805 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 CLP1Q92989 425 aaKnown RBP24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 HLA-CQ95604 372 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 MRPL38Q96DV4 380 aaKnown RBP24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 PPP1R16BQ96T49 567 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 OSMRQ99650 979 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 KCNMB3Q9NPA1 279 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 ST3GAL5Q9UNP4 418 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 RWDD3Q9Y3V2 267 aa24.45■■□□□ 1.5
CCDC28B-201ENST00000373602 C5orf67F2Z3F1 127 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms