RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CENPUQ71F23 418 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 DEFB132Q7Z7B7 95 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 COL15A1P39059 1388 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 GOLGA8CPA6NN73 597 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 K7ERI5 159 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 PALMO75781 387 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 SKIP12755 728 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 SURF1Q15526 300 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 TRIP13Q15645 432 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-203ENST00000372407 PYROXD1Q8WU10 500 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 PIM2Q9P1W9 311 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 DNAJC12Q9UKB3 198 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 TRIM49BA6NDI0 452 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 ZRANB2O95218 330 aaKnown RBP eCLIP12.3□□□□□ -0.44
PTPRF-203ENST00000372407 CYP19A1P11511 503 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-203ENST00000372407 MTERF2Q49AM1 385 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 C7orf31Q8N865 590 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 EFHD1Q9BUP0 239 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 ALDH8A1Q9H2A2 487 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-203ENST00000372407 CACYBPQ9HB71 228 aaKnown RBP12.3□□□□□ -0.44
PTPRF-203ENST00000372407 SLC38A10Q9HBR0 1119 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 SNX24Q9Y343 169 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 UBR1Q8IWV7 1749 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 MYO1CO00159 1063 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 ACSL3O95573 720 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 MRPS25P82663 173 aaKnown RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 SEMA3FQ13275 785 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 GRAPQ13588 217 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 TSGA10IPQ3SY00 556 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 PDXDC2PQ6P474 469 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 CYB5R4Q7L1T6 521 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 GRAPLQ8TC17 118 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 PPWD1Q96BP3 646 aaKnown RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 TMEM47Q9BQJ4 181 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 APOL6Q9BWW8 343 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 PLAAQ9Y263 795 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 SCINQ9Y6U3 715 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 SYNGAP1Q96PV0 1343 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 NPR1P16066 1061 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 CCNA1P78396 465 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 DCLK2Q8N568 766 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 PRPF31Q8WWY3 499 aaKnown RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 MID2Q9UJV3 735 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 FAF1Q9UNN5 650 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 AKT3Q9Y243 479 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 PRPSAP2O60256 369 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 ESRRAP11474 423 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 CTTNQ14247 550 aaKnown RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 OR6B2Q6IFH4 312 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 TMEM179Q6ZVK1 233 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 ENAHQ8N8S7 591 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 KCTD6Q8NC69 237 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 PDZD8Q8NEN9 1154 aa12.29□□□□□ -0.44
PTPRF-203ENST00000372407 FAM193BQ96PV7 902 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-203ENST00000372407 LRRC53A6NM62 1247 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 SRGAP2O75044 1071 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 SMIM24O75264 130 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 CD58P19256 250 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 KPNA2P52292 529 aaKnown RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 GYS2P54840 703 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 SPOUT1Q5T280 376 aaKnown RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 ELAC2Q9BQ52 826 aaKnown RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 COA1Q9GZY4 146 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 THEGQ9P2T0 379 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 TPX2Q9ULW0 747 aaKnown RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 TTC26A0AVF1 554 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 POTEMA6NI47 508 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 SNAP23O00161 211 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 HOXA13P31271 388 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 FAM83BQ5T0W9 1011 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 TBC1D9BQ66K14 1250 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 SLFN12LQ6IEE8 588 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 SGMS1Q86VZ5 419 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 SNX25Q9H3E2 840 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 LY9Q9HBG7 655 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 LRRC4Q9HBW1 653 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 MAPK13O15264 365 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 PRDX5P30044 214 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 MAGEA9P43362 315 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 KCNH2Q12809 1159 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 RAB44Q7Z6P3 723 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 GUF1Q8N442 669 aaKnown RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 OXER1Q8TDS5 423 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 PITPNM3Q9BZ71 974 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 IQSEC2Q5JU85 1478 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 NEDD4P46934 1319 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 GOLGA8IPA6NC78 632 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 GOLGA8JA6NMD2 632 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 ZBTB5O15062 677 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 ZBED1O96006 694 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 PSAPP07602 524 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 EIF2AK2P19525 551 aaKnown RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 PEX3P56589 373 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 ORC2Q13416 577 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-203ENST00000372407 HLFQ16534 295 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 AP1ARQ63HQ0 302 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 XXYLT1Q8NBI6 393 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 GDAP1Q8TB36 358 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 MASTLQ96GX5 879 aa12.28□□□□□ -0.44
PTPRF-203ENST00000372407 TRIM4Q9C037 500 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms