RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 MAP7D1Q3KQU3 841 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 HHATQ5VTY9 493 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 CYFIP1Q7L576 1253 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 OR6B3Q8NGW1 331 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 JPH1Q9HDC5 661 aaPredicted RBP16.13■□□□□ 0.17
COL17A1-201ENST00000353479 RGL1Q9NZL6 768 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 PSMC4P43686 418 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 CYP27A1Q02318 531 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 PRMT6Q96LA8 375 aaPredicted RBP16.12■□□□□ 0.17
COL17A1-201ENST00000353479 CEP63Q96MT8 703 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 SLC38A10Q9HBR0 1119 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 PTPN22Q9Y2R2 807 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 FOXN1O15353 648 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 KIF11P52732 1056 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 PPP4CP60510 307 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 EPHA7Q15375 998 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 KNOP1Q1ED39 458 aaKnown RBP16.12■□□□□ 0.17
COL17A1-201ENST00000353479 ZNF667Q5HYK9 610 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 CCDC110Q8TBZ0 833 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 MOCS3O95396 460 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 SLC12A2P55011 1212 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 ZNF394Q53GI3 561 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 C3orf67Q6ZVT6 689 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 ARHGEF37A1IGU5 675 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 CTNNA1P35221 906 aaKnown RBP16.12■□□□□ 0.17
COL17A1-201ENST00000353479 SIX6OS1Q8N1H7 587 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 ATF2P15336 505 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 TNFAIP2Q03169 654 aa16.12■□□□□ 0.17
COL17A1-201ENST00000353479 FTCDO95954 541 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 MAN1A1P33908 653 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 MRPL47Q9HD33 250 aaKnown RBP16.11■□□□□ 0.17
COL17A1-201ENST00000353479 DNAJC12Q9UKB3 198 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 CTNND1O60716 968 aaKnown RBP16.11■□□□□ 0.17
COL17A1-201ENST00000353479 HDLBPQ00341 1268 aaKnown RBP16.11■□□□□ 0.17
COL17A1-201ENST00000353479 PROM2Q8N271 834 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 TOPORSQ9NS56 1045 aaPredicted RBP16.11■□□□□ 0.17
COL17A1-201ENST00000353479 ZNF500O60304 480 aaPredicted RBP16.11■□□□□ 0.17
COL17A1-201ENST00000353479 JMJD4Q9H9V9 463 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 KIAA1586Q9HCI6 787 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 PLCB1Q9NQ66 1216 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 FBXO2Q9UK22 296 aaPredicted RBP16.11■□□□□ 0.17
COL17A1-201ENST00000353479 STXBP3O00186 592 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 FYB2Q5VWT5 728 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 CCDC170Q8IYT3 715 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 PCDHA13Q9Y5I0 950 aa16.11■□□□□ 0.17
COL17A1-201ENST00000353479 NDUFA10O95299 355 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.1■□□□□ 0.17
COL17A1-201ENST00000353479 GSDMBQ8TAX9 411 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 TYW1Q9NV66 732 aaKnown RBP16.1■□□□□ 0.17
COL17A1-201ENST00000353479 ADAMTS1Q9UHI8 967 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 HIP1RO75146 1068 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 PPP1R2P3Q6NXS1 205 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 ZBTB24O43167 697 aaPredicted RBP16.1■□□□□ 0.17
COL17A1-201ENST00000353479 KRT1P04264 644 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 NFIAQ12857 509 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 ARMCX2Q7L311 632 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 SMC1BQ8NDV3 1235 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 TSC1Q92574 1164 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 MAGOHBQ96A72 148 aaKnown RBP16.1■□□□□ 0.17
COL17A1-201ENST00000353479 ATP8B3O60423 1300 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 GIPC1O14908 333 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 FGFR2P21802 821 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 YWHABP31946 246 aaKnown RBP16.1■□□□□ 0.17
COL17A1-201ENST00000353479 C2orf40Q9H1Z8 148 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 RABEP2Q9H5N1 569 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 ANAPC4Q9UJX5 808 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 SGK1O00141 431 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 STAT5BP51692 787 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 TGFB2P61812 414 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 UHMK1Q8TAS1 419 aaKnown RBP16.1■□□□□ 0.17
COL17A1-201ENST00000353479 PPM1EQ8WY54 764 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 SAAL1Q96ER3 474 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 PANX2Q96RD6 677 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 SH2D3AQ9BRG2 576 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.1■□□□□ 0.17
COL17A1-201ENST00000353479 SEL1LQ9UBV2 794 aa16.1■□□□□ 0.17
COL17A1-201ENST00000353479 PDS5AQ29RF7 1337 aaKnown RBP16.09■□□□□ 0.17
COL17A1-201ENST00000353479 PASKQ96RG2 1323 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 P3H4Q92791 437 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 ZKSCAN4Q969J2 545 aaPredicted RBP16.09■□□□□ 0.17
COL17A1-201ENST00000353479 IFT122Q9HBG6 1241 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 NPHP3-ACAD11A0A0J9YXS1 232 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 EFCAB8A8MWE9 144 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 CXCR5P32302 372 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 DYNLT1P63172 113 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 GUCY2DQ02846 1103 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 KCNH2Q12809 1159 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 SNX1Q13596 522 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 OR6J1Q8NGC5 347 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 CDC23Q9UJX2 597 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 MFAP3LO75121 409 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 ANXA13P27216 316 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 GPC3P51654 580 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 PARK7Q99497 189 aaKnown RBP16.09■□□□□ 0.17
COL17A1-201ENST00000353479 PHLPP2Q6ZVD8 1323 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 CNTNAP5Q8WYK1 1306 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 NWD1Q149M9 1564 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 LGALS16A8MUM7 142 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 RGS16O15492 202 aaPredicted RBP16.09■□□□□ 0.17
COL17A1-201ENST00000353479 CELF2O95319 508 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms