RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 NAP1L4Q99733 375 aaKnown RBP17.37■□□□□ 0.37
VAPA-201ENST00000340541 GABBR1Q9UBS5 961 aa17.37■□□□□ 0.37
VAPA-201ENST00000340541 TCEAL9Q9UHQ7 104 aa17.37■□□□□ 0.37
VAPA-201ENST00000340541 VAV3Q9UKW4 847 aa17.37■□□□□ 0.37
VAPA-201ENST00000340541 NCOR1O75376 2440 aa17.37■□□□□ 0.37
VAPA-201ENST00000340541 RSPH10B2B2RC85 870 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 RFXAPO00287 272 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 TBX3O15119 743 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 CHMP2AO43633 222 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 ZNF862O60290 1169 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 HBP1O60381 514 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 GJB5O95377 273 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 CTSHP09668 335 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 RSPH10BP0C881 870 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 SFNP31947 248 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 JAK3P52333 1124 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 UGCGQ16739 394 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 FAM26DQ5JW98 314 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 MICALL1Q8N3F8 863 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 FAM184AQ8NB25 1140 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 RDM1Q8NG50 284 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 FAM20AQ96MK3 541 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 CERS4Q9HA82 394 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 SAMM50Q9Y512 469 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 PTPRSQ13332 1948 aa17.36■□□□□ 0.37
VAPA-201ENST00000340541 PRRC2BQ5JSZ5 2229 aaKnown RBP17.36■□□□□ 0.37
VAPA-201ENST00000340541 EPOPA6NHQ4 379 aa17.35■□□□□ 0.37
VAPA-201ENST00000340541 CHRNA1P02708 482 aa17.35■□□□□ 0.37
VAPA-201ENST00000340541 MGAT3Q09327 533 aa17.35■□□□□ 0.37
VAPA-201ENST00000340541 PPP2R5CQ13362 524 aa17.35■□□□□ 0.37
VAPA-201ENST00000340541 SKIV2LQ15477 1246 aaKnown RBP17.35■□□□□ 0.37
VAPA-201ENST00000340541 DNAJB3Q8WWF6 145 aa17.35■□□□□ 0.37
VAPA-201ENST00000340541 BBXQ8WY36 941 aaPredicted RBP17.35■□□□□ 0.37
VAPA-201ENST00000340541 TNPO1Q92973 898 aaKnown RBP17.35■□□□□ 0.37
VAPA-201ENST00000340541 FOXP1Q9H334 677 aaPredicted RBP17.35■□□□□ 0.37
VAPA-201ENST00000340541 PCDHA2Q9Y5H9 948 aa17.35■□□□□ 0.37
VAPA-201ENST00000340541 COL1A2P08123 1366 aa17.35■□□□□ 0.37
VAPA-201ENST00000340541 BDP1A6H8Y1 2624 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 EML1O00423 815 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 LPXNO60711 386 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 ARHGEF15O94989 841 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 STBD1O95210 358 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 ERVK-21P61565 698 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 DEFB103AP81534 67 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 SPIRE1Q08AE8 756 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 GRB10Q13322 594 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 MKRN4PQ13434 485 aaPredicted RBP17.34■□□□□ 0.37
VAPA-201ENST00000340541 SAFBQ15424 915 aaKnown RBP eCLIP17.34■□□□□ 0.37
VAPA-201ENST00000340541 ZNF484Q5JVG2 852 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 MTHFD1LQ6UB35 978 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 MIER3Q7Z3K6 550 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 HLA-CQ95604 372 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 TGS1Q96RS0 853 aaKnown RBP17.34■□□□□ 0.37
VAPA-201ENST00000340541 INSL6Q9Y581 213 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 REV3LO60673 3130 aa17.34■□□□□ 0.37
VAPA-201ENST00000340541 EVPLQ92817 2033 aa17.33■□□□□ 0.37
VAPA-201ENST00000340541 KLRC1P26715 233 aa17.33■□□□□ 0.36
VAPA-201ENST00000340541 PRKCEQ02156 737 aa17.33■□□□□ 0.36
VAPA-201ENST00000340541 PLEKHG4Q58EX7 1191 aa17.33■□□□□ 0.36
VAPA-201ENST00000340541 CKAP2LQ8IYA6 745 aa17.33■□□□□ 0.36
VAPA-201ENST00000340541 FAM49AQ9H0Q0 323 aaPredicted RBP17.33■□□□□ 0.36
VAPA-201ENST00000340541 MICAL3Q7RTP6 2002 aa17.33■□□□□ 0.36
VAPA-201ENST00000340541 SMIM35A0A1B0GVV1 85 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 C22orf31O95567 290 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 AMHP03971 560 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 OATP04181 439 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 U2AF2P26368 475 aaKnown RBP eCLIP17.32■□□□□ 0.363e-7■■■□□ 16.3
VAPA-201ENST00000340541 TFF2Q03403 129 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 NOSTRINQ8IVI9 506 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 DBF4BQ8NFT6 615 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 FAM167AQ96KS9 214 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 MTMR9Q96QG7 549 aa17.32■□□□□ 0.36
VAPA-201ENST00000340541 LOXHD1Q8IVV2 1947 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 LCHNA4D1U4 455 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 GJB2P29033 226 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 MRPS6P82932 125 aaKnown RBP17.31■□□□□ 0.36
VAPA-201ENST00000340541 CUL4AQ13619 759 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 TRMT1LQ7Z2T5 733 aaKnown RBP17.31■□□□□ 0.36
VAPA-201ENST00000340541 RSPH3Q86UC2 560 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 SLFN12Q8IYM2 578 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 KIAA0319LQ8IZA0 1049 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 TMEM60Q9H2L4 133 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 CDY2AQ9Y6F7 541 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 XIRP2A4UGR9 3374 aa17.31■□□□□ 0.36
VAPA-201ENST00000340541 LINC01553A4QN01 128 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 NEMFO60524 1076 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 RPLP2P05387 115 aaKnown RBP17.3■□□□□ 0.36
VAPA-201ENST00000340541 HTRA4P83105 476 aaPredicted RBP17.3■□□□□ 0.36
VAPA-201ENST00000340541 TMEM62Q0P6H9 643 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 LPIN1Q14693 890 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 TARBP2Q15633 366 aaKnown RBP17.3■□□□□ 0.36
VAPA-201ENST00000340541 CALCRLQ16602 461 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 FBXO47Q5MNV8 452 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 LINC01465Q8N7H1 131 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 BANK1Q8NDB2 785 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 SEPT8Q92599 483 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 SAMD11Q96NU1 681 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 CEP89Q96ST8 783 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 SUGCTQ9HAC7 445 aa17.3■□□□□ 0.36
VAPA-201ENST00000340541 NRBP2Q9NSY0 501 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms