RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SCP2P22307 547 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 CDC25AP30304 524 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 AP3M2P53677 418 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 ZMYND12Q9H0C1 365 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 PIN4Q9Y237 131 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 PAXBP1Q9Y5B6 917 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 PVALEFA0A1B0GWK0 134 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 CHGBP05060 677 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 SKIP12755 728 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 FERP16591 822 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 MAN2A1Q16706 1144 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 SFR1Q86XK3 245 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 GDAQ9Y2T3 454 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 BZW2Q9Y6E2 419 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 POTEFA5A3E0 1075 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 VWA5AO00534 786 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 POTEIP0CG38 1075 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 NSFP46459 744 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 POLR2FP61218 127 aaKnown RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 ATP2C1P98194 919 aaPredicted RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 ZNF746Q6NUN9 644 aaPredicted RBP11.05□□□□□ -0.64
USP54-201ENST00000339859 POTEGQ6S5H5 508 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 POTEEQ6S8J3 1075 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 DPF3Q92784 378 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 ODF2LQ9ULJ1 636 aa11.05□□□□□ -0.64
USP54-201ENST00000339859 HUS1O60921 280 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 PRKCBP05771 671 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 SP3Q02447 781 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 MTERF4Q7Z6M4 381 aaKnown RBP11.04□□□□□ -0.64
USP54-201ENST00000339859 KIAA1524Q8TCG1 905 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 HMX1Q9NP08 348 aaPredicted RBP11.04□□□□□ -0.64
USP54-201ENST00000339859 FBXO28Q9NVF7 368 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 NWD2Q9ULI1 1742 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 SFI1A8K8P3 1242 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 CCNE1P24864 410 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 MXI1P50539 228 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 SPECC1LQ69YQ0 1117 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 PCDHB7Q9Y5E2 793 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 STRCQ7RTU9 1775 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 GAS2O43903 313 aaKnown RBP11.04□□□□□ -0.64
USP54-201ENST00000339859 ZNF75DP51815 510 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 ZNF484Q5JVG2 852 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 PCNX4Q63HM2 1172 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 RSRC2Q7L4I2 434 aaKnown RBP11.04□□□□□ -0.64
USP54-201ENST00000339859 TTC39CQ8N584 583 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 CERS5Q8N5B7 392 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 CCDC77Q9BR77 488 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 VTA1Q9NP79 307 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 STARD7Q9NQZ5 370 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 PXMP2Q9NR77 195 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 NXF1Q9UBU9 619 aaKnown RBP11.04□□□□□ -0.64
USP54-201ENST00000339859 CYP2C9P11712 490 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 TCF7P36402 384 aaPredicted RBP11.04□□□□□ -0.64
USP54-201ENST00000339859 SEMA3FQ13275 785 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 ZNF667Q5HYK9 610 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 ZNF569Q5MCW4 686 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 SIX6OS1Q8N1H7 587 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 SECISBP2LQ93073 1101 aaKnown RBP11.04□□□□□ -0.64
USP54-201ENST00000339859 LRRC4Q9HBW1 653 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 MSCO60682 206 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 HIP1RO75146 1068 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 PGK2P07205 417 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 STAG3L1P0CL83 205 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 CIITAP33076 1130 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 GUCY1A2P33402 732 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 COPB1P53618 953 aaKnown RBP11.04□□□□□ -0.64
USP54-201ENST00000339859 PRKCEQ02156 737 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 COASYQ13057 564 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 TYW1BQ6NUM6 668 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 DYDC1Q8WWB3 177 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 ZNF560Q96MR9 790 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 LZTFL1Q9NQ48 299 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 RAB20Q9NX57 234 aa11.04□□□□□ -0.64
USP54-201ENST00000339859 CTSHP09668 335 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 AKR1A1P14550 325 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 EMC2Q15006 297 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 CEP57Q86XR8 500 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 RNF149Q8NC42 400 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 P2RX7Q99572 595 aaKnown RBP11.03□□□□□ -0.64
USP54-201ENST00000339859 TSKSQ9UJT2 592 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 PCDHA5Q9Y5H7 936 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 LTBP3Q9NS15 1303 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 GOLGA8IPA6NC78 632 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 GOLGA8JA6NMD2 632 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 SRGAP2BP0DMP2 458 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 MAGEA1P43355 309 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 ANKRD23Q86SG2 305 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 HEXIM2Q96MH2 286 aaKnown RBP11.03□□□□□ -0.64
USP54-201ENST00000339859 ACAP3Q96P50 834 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 TUBGCP2Q9BSJ2 902 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 AAASQ9NRG9 546 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 FAM169AQ9Y6X4 670 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 TRAPPC3O43617 180 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 GABPAQ06546 454 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 SKIV2LQ15477 1246 aaKnown RBP11.03□□□□□ -0.64
USP54-201ENST00000339859 TMCO3Q6UWJ1 677 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 CATSPERGQ6ZRH7 1159 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 MTMR14Q8NCE2 650 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 OR6B3Q8NGW1 331 aa11.03□□□□□ -0.64
USP54-201ENST00000339859 MTG1Q9BT17 334 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms