RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 LCA5LO95447 670 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 HSPD1P10809 573 aaKnown RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 CASP1P29466 404 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 ABCD1P33897 745 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 PPP1R7Q15435 360 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 FKBP15Q5T1M5 1219 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 NFRKBQ6P4R8 1299 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 LRIG3Q6UXM1 1119 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 SMYD4Q8IYR2 804 aaPredicted RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 KCNN1Q92952 543 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 BICD1Q96G01 975 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 CTAGE1Q96RT6 745 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 TSC22D3Q99576 134 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 YIPF2Q9BWQ6 316 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 NKX1-2Q9UD57 310 aaPredicted RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 TMEM59LQ9UK28 342 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 BCS1LQ9Y276 419 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 SCN5AQ14524 2016 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 ESYT3A0FGR9 886 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 N4BP3O15049 544 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 KRT16P08779 473 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 ZBTB48P10074 688 aaPredicted RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 PRDX5P30044 214 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 ARMC9Q7Z3E5 817 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 CACNA2D3Q8IZS8 1091 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 TEX9Q8N6V9 391 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 ZNF579Q8NAF0 562 aaKnown RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 NCSTNQ92542 709 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 CENPTQ96BT3 561 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 TLCD1Q96CP7 247 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 NAF1Q96HR8 494 aaKnown RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 TLR10Q9BXR5 811 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 FAM217BQ9NTX9 383 aaPredicted RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 GGA1Q9UJY5 639 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 PLAAQ9Y263 795 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 PLXNA4Q9HCM2 1894 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 MICAL3Q7RTP6 2002 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 COBLO75128 1261 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 SLC34A2O95436 690 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 VIMP08670 466 aaKnown RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 SNHG28P0DPA3 235 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 IDEP14735 1019 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 NQO1P15559 274 aaKnown RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 CNGA1P29973 690 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 HSD17B3P37058 310 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 CCT6AP40227 531 aaKnown RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 RANBP1P43487 201 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 COPB1P53618 953 aaKnown RBP6.12□□□□□ -1.43
CSDE1-202ENST00000339438 FKBP1BP68106 108 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 NFIAQ12857 509 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 ITIH4Q14624 930 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 CCDC178Q5BJE1 867 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 MAEAQ7L5Y9 396 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 MTRQ99707 1265 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 MAF1Q9H063 256 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 NEUROG2Q9H2A3 272 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 DBNDD1Q9H9R9 158 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 CFAP73A6NFT4 308 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 DDTLA6NHG4 134 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ASAP2O43150 1006 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 RANBP6O60518 1105 aaKnown RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ALDH3A1P30838 453 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 PSMC4P43686 418 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 STX17P56962 302 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 CDK17Q00537 523 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 PAK2Q13177 524 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 TRIM14Q14142 442 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 KIAA0753Q2KHM9 967 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 TCP11X2Q5H9J9 407 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 KRT40Q6A162 431 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 MICALL2Q8IY33 904 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 OR2W6PQ8NHA6 318 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 TEKT4Q8WW24 435 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ANKS1AQ92625 1134 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 MTMR8Q96EF0 704 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ANKRD27Q96NW4 1050 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 FAM167BQ9BTA0 163 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 DACH1Q9UI36 760 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 MAPK8IP1Q9UQF2 711 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 M0R2C6 588 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 HSPA8P11142 646 aaKnown RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 GM2AP17900 193 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 SP100P23497 879 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 SHMT1P34896 483 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 MECOMQ03112 1051 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 CFAP58Q5T655 872 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 RNF220Q5VTB9 566 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 DPP8Q6V1X1 898 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 KRI1Q8N9T8 703 aaKnown RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 MOV10L1Q9BXT6 1211 aaKnown RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 SH2D4AQ9H788 454 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ZWILCHQ9H900 591 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 AGPAT5Q9NUQ2 364 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ABCF3Q9NUQ8 709 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 CNOT7Q9UIV1 285 aaKnown RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 HACL1Q9UJ83 578 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 TBC1D30Q9Y2I9 924 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 DNAH14Q0VDD8 3507 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 A0A0G2JLL6 359 aaPredicted RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms