RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 POLR2DO15514 142 aaKnown RBP24.75■■□□□ 1.55
SDC3-202ENST00000339394 RARRES1P49788 294 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 NDUFA8P51970 172 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 ATN1P54259 1190 aaPredicted RBP24.75■■□□□ 1.55
SDC3-202ENST00000339394 HIC1Q14526 733 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 GRIK4Q16099 956 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 FAM47CQ5HY64 1035 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 SESTD1Q86VW0 696 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 CEP170P1Q96L14 293 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 CYP26B1Q9NR63 512 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 GTF2IRD1Q9UHL9 959 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 DBR1Q9UK59 544 aaKnown RBP24.75■■□□□ 1.55
SDC3-202ENST00000339394 HOXC8P31273 242 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 UBE2HP62256 183 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 IGBP1P78318 339 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 TARBP2Q15633 366 aaKnown RBP24.74■■□□□ 1.55
SDC3-202ENST00000339394 MTERF2Q49AM1 385 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 NAALADL2Q58DX5 795 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 ZNF484Q5JVG2 852 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 SLC39A5Q6ZMH5 540 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 LMBR1Q8WVP7 490 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 TRAPPC12Q8WVT3 735 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 BHMT2Q9H2M3 363 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 BLOC1S4Q9NUP1 217 aa24.74■■□□□ 1.55
SDC3-202ENST00000339394 GOLGA6L22H0YM25 854 aa24.73■■□□□ 1.55
SDC3-202ENST00000339394 EYA4O95677 639 aa24.73■■□□□ 1.55
SDC3-202ENST00000339394 CDK7P50613 346 aa24.73■■□□□ 1.55
SDC3-202ENST00000339394 XKR9Q5GH70 373 aa24.73■■□□□ 1.55
SDC3-202ENST00000339394 CEP89Q96ST8 783 aa24.73■■□□□ 1.55
SDC3-202ENST00000339394 LMBRD1Q9NUN5 540 aa24.73■■□□□ 1.55
SDC3-202ENST00000339394 SCN10AQ9Y5Y9 1956 aa24.73■■□□□ 1.55
SDC3-202ENST00000339394 C17orf102A2RUQ5 167 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 RRN3P2A6NIE6 340 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 STAT6P42226 847 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 ADAM17P78536 824 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 PTPN11Q06124 597 aaPredicted RBP24.72■■□□□ 1.55
SDC3-202ENST00000339394 E2F4Q16254 413 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 MARCH8Q5T0T0 291 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 IQUBQ8NA54 791 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 DHX58Q96C10 678 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 SEZ6LQ9BYH1 1024 aa24.72■■□□□ 1.55
SDC3-202ENST00000339394 PLA2G4BP0C869 781 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 GNAT1P11488 350 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 SYKP43405 635 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 ZNF200P98182 395 aaPredicted RBP24.71■■□□□ 1.55
SDC3-202ENST00000339394 C1orf53Q5VUE5 145 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 GDF6Q6KF10 455 aaPredicted RBP24.71■■□□□ 1.55
SDC3-202ENST00000339394 RAD54LQ92698 747 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 CCDC43Q96MW1 224 aaKnown RBP24.71■■□□□ 1.55
SDC3-202ENST00000339394 STK17AQ9UEE5 414 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 COL1A2P08123 1366 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 SNX17Q15036 470 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 LARP4BQ92615 738 aaKnown RBP24.71■■□□□ 1.55
SDC3-202ENST00000339394 ZBTB10Q96DT7 871 aa24.71■■□□□ 1.55
SDC3-202ENST00000339394 PYM1Q9BRP8 204 aaKnown RBP24.71■■□□□ 1.55
SDC3-202ENST00000339394 ARHGEF35A5YM69 484 aa24.7■■□□□ 1.54
SDC3-202ENST00000339394 KLRC1P26715 233 aa24.7■■□□□ 1.54
SDC3-202ENST00000339394 SLC12A3P55017 1021 aa24.7■■□□□ 1.54
SDC3-202ENST00000339394 TBC1D8BQ0IIM8 1120 aa24.7■■□□□ 1.54
SDC3-202ENST00000339394 SYT2Q8N9I0 419 aaPredicted RBP24.7■■□□□ 1.54
SDC3-202ENST00000339394 TRMT13Q9NUP7 481 aaKnown RBP24.7■■□□□ 1.54
SDC3-202ENST00000339394 TUBE1Q9UJT0 475 aa24.7■■□□□ 1.54
SDC3-202ENST00000339394 PPME1Q9Y570 386 aa24.7■■□□□ 1.54
SDC3-202ENST00000339394 MBLAC1A4D2B0 266 aaPredicted RBP24.69■■□□□ 1.54
SDC3-202ENST00000339394 TREHO43280 583 aa24.69■■□□□ 1.54
SDC3-202ENST00000339394 C22orf31O95567 290 aa24.69■■□□□ 1.54
SDC3-202ENST00000339394 SSBP05455 408 aaKnown RBP eCLIP24.69■■□□□ 1.54
SDC3-202ENST00000339394 SNW1Q13573 536 aaKnown RBP24.69■■□□□ 1.54
SDC3-202ENST00000339394 MCM6Q14566 821 aa24.69■■□□□ 1.54
SDC3-202ENST00000339394 LONRF3Q496Y0 759 aa24.69■■□□□ 1.54
SDC3-202ENST00000339394 MTHFD1LQ6UB35 978 aa24.69■■□□□ 1.54
SDC3-202ENST00000339394 ENGASEQ8NFI3 743 aa24.69■■□□□ 1.54
SDC3-202ENST00000339394 TRPV6Q9H1D0 765 aa24.69■■□□□ 1.54
SDC3-202ENST00000339394 B4GALT4O60513 344 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 ZNF202O95125 648 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 LIG1P18858 919 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 MCM4P33991 863 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 FAM160A1Q05DH4 1040 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 DHX8Q14562 1220 aaKnown RBP24.68■■□□□ 1.54
SDC3-202ENST00000339394 PTGISQ16647 500 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 PADI6Q6TGC4 694 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 FMR1NBQ8N0W7 255 aaPredicted RBP24.68■■□□□ 1.54
SDC3-202ENST00000339394 SLC7A3Q8WY07 619 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 CTAGE1Q96RT6 745 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 CUEDC2Q9H467 287 aa24.68■■□□□ 1.54
SDC3-202ENST00000339394 DHX33Q9H6R0 707 aaKnown RBP24.68■■□□□ 1.54
SDC3-202ENST00000339394 BMP2KQ9NSY1 1161 aaPredicted RBP24.68■■□□□ 1.54
SDC3-202ENST00000339394 MAGEB2O15479 319 aa24.67■■□□□ 1.54
SDC3-202ENST00000339394 PQBP1O60828 265 aaKnown RBP24.67■■□□□ 1.54
SDC3-202ENST00000339394 MAFO75444 373 aaPredicted RBP24.67■■□□□ 1.54
SDC3-202ENST00000339394 DGAT1O75907 488 aa24.67■■□□□ 1.54
SDC3-202ENST00000339394 POLGP54098 1239 aaPredicted RBP24.67■■□□□ 1.54
SDC3-202ENST00000339394 LRRC26Q2I0M4 334 aa24.67■■□□□ 1.54
SDC3-202ENST00000339394 ANKRD33Q7Z3H0 272 aa24.67■■□□□ 1.54
SDC3-202ENST00000339394 FAM126BQ8IXS8 530 aa24.67■■□□□ 1.54
SDC3-202ENST00000339394 SERTAD1Q9UHV2 236 aa24.67■■□□□ 1.54
SDC3-202ENST00000339394 MROH7Q68CQ1 1323 aa24.67■■□□□ 1.54
SDC3-202ENST00000339394 IGKV6-21A0A0C4DH24 114 aa24.67■■□□□ 1.54
SDC3-202ENST00000339394 ACTN4O43707 911 aaKnown RBP24.67■■□□□ 1.54
SDC3-202ENST00000339394 USO1O60763 962 aaKnown RBP24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms