RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RNF43Q68DV7 783 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 KRT27Q7Z3Y8 459 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 ALLCQ8N6M5 410 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 FAM133AQ8N9E0 248 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 GOLM1Q8NBJ4 401 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 PGBD1Q96JS3 809 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 MRPL1Q9BYD6 325 aaKnown RBP4.46□□□□□ -1.69
NEDD4-201ENST00000338963 ETNK1Q9HBU6 452 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 PARP2Q9UGN5 583 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 PALD1Q9ULE6 856 aa4.46□□□□□ -1.69
NEDD4-201ENST00000338963 GRIN2BQ13224 1484 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 IFT140Q96RY7 1462 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 WDR7Q9Y4E6 1490 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 LAMC1P11047 1609 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 VAMP4O75379 141 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SYKP43405 635 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 KPNA1P52294 538 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CEBPZQ03701 1054 aaKnown RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 ACVR2BQ13705 512 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SNX30Q5VWJ9 437 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DBF4Q9UBU7 674 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 MTRF1LQ9UGC7 380 aaKnown RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SGTAO43765 313 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CCDC22O60826 627 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 HEXIM1O94992 359 aaKnown RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 UNC5CO95185 931 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CALM1P0DP23 149 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CALM2P0DP24 149 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CALM3P0DP25 149 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SLC1A1P43005 524 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 PLCD1P51178 756 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CTAG1AP78358 180 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 FCHO2Q0JRZ9 810 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 ANO1Q5XXA6 986 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CEP85Q6P2H3 762 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF449Q6P9G9 518 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DHX32Q7L7V1 743 aaKnown RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 PODNQ7Z5L7 613 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 TTC30BQ8N4P2 665 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 ARL6IP6Q8N6S5 226 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 MCUR1Q96AQ8 359 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CDCA5Q96FF9 252 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 BIRC8Q96P09 236 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SPOCK3Q9BQ16 436 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SELENOSQ9BQE4 189 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DESI2Q9BSY9 194 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 PLVAPQ9BX97 442 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 FANCLQ9NW38 375 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 ARHGEF38Q9NXL2 777 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 NKIRAS1Q9NYS0 192 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 TRIM17Q9Y577 477 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 ADCY9O60503 1353 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 WDR91A4D1P6 747 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CFAP69A5D8W1 941 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 EVPLLA8MZ36 301 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 M0QX08 132 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 S100BP04271 92 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 GNAI2P04899 355 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 OCM2P0CE71 109 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 OCMP0CE72 109 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CD9P21926 228 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 BDNFP23560 247 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 PRKAR2BP31323 418 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 STX1BP61266 288 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 C6orf10Q5SRN2 563 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DENND2CQ68D51 928 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 TMC4Q7Z404 712 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 COL23A1Q86Y22 540 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 TCF12Q99081 682 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SHCBP1LQ9BZQ2 653 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 PICK1Q9NRD5 415 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SLC12A6Q9UHW9 1150 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 PADI4Q9UM07 663 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 COQ6Q9Y2Z9 468 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SQORQ9Y6N5 450 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 ABCC10Q5T3U5 1492 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 F8W8V4 182 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CCDC188H7C350 402 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 HOXB1P14653 301 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 NLRP6P59044 892 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 GUCY2DQ02846 1103 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 LPIN1Q14693 890 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 NCAPHQ15003 741 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DIXDC1Q155Q3 683 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DPCR1Q3MIW9 517 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DCLK2Q8N568 766 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SPATA5Q8NB90 893 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SYTL4Q96C24 671 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 PBKQ96KB5 322 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 RUNDC3BQ96NL0 473 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DUSP9Q99956 384 aaKnown RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 CCDC77Q9BR77 488 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DDX23Q9BUQ8 820 aaKnown RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 VTA1Q9NP79 307 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 USP40Q9NVE5 1235 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 DCAF16Q9NXF7 216 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 NDE1Q9NXR1 346 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 UVRAGQ9P2Y5 699 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 USP20Q9Y2K6 914 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 PCDHB4Q9Y5E5 795 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms