RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 POLA2Q14181 598 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 LONRF2Q1L5Z9 754 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 Q4G0T1 1027 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ZSCAN25Q6NSZ9 544 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 C1orf228Q6PIY5 440 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 IKBIPQ70UQ0 350 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ARHGEF25Q86VW2 580 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 AIDAQ96BJ3 306 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 NLRP3Q96P20 1036 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 BHLHE41Q9C0J9 482 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 MTO1Q9Y2Z2 717 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 MAP3K1Q13233 1512 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 TRIM43BA6NCK2 446 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ECDO95905 644 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 SRGAP2CP0DJJ0 459 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ZNF45Q02386 682 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ZNF284Q2VY69 593 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ARMCX4Q5H9R4 360 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ANKRD36BP1Q96IX9 119 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 RBBP8Q99708 897 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 A0A0G2JPF8 293 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 TMEM120BA0PK00 339 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 TARSL2A2RTX5 802 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 HNRNPCL3B7ZW38 293 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ATP5J2-PTCD1G3V325 749 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 SSNA1O43805 119 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 HNRNPCL4P0DMR1 293 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 LMOD1P29536 600 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 PEX5P50542 639 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 RIPK4P57078 832 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ZNF467Q7Z7K2 595 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 CHCHD4Q8N4Q1 142 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 TRIM51Q9BSJ1 452 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 HSPD1P10809 573 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 AARSP49588 968 aaKnown RBP eCLIP8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 AP1B1Q10567 949 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 IFRD2Q12894 506 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 SLC9C2Q5TAH2 1124 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 C3orf33Q6P1S2 294 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ARHGAP22Q7Z5H3 698 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 TNIP2Q8NFZ5 429 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 PIGKQ92643 395 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 CITED4Q96RK1 184 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ELOVL6Q9H5J4 265 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 RWDD2AQ9UIY3 292 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 RABGEF1Q9UJ41 708 aa8.15□□□□□ -1.1
LIMCH1-201ENST00000313860 ULK1O75385 1050 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 KCNA3P22001 575 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 IL9RQ01113 521 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 NSUN2Q08J23 767 aaKnown RBP eCLIP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF235Q14590 738 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 HADHQ16836 314 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 PLEKHO1Q53GL0 409 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 IZUMO1Q8IYV9 350 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 SAMD3Q8N6K7 520 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 GALNT6Q8NCL4 622 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 SUN5Q8TC36 379 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 GLMNQ92990 594 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 SAV1Q9H4B6 383 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 RBM47A0AV96 593 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 N4BP1O75113 896 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 TOP3BO95985 862 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 CASP4P49662 377 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 BEND3Q5T5X7 828 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 TAS2R42Q7RTR8 314 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 ADAT2Q7Z6V5 191 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 RBBP8NLQ8NC74 664 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 OSBPL9Q96SU4 736 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 RUBCNLQ9H714 662 aa8.15□□□□□ -1.11
LIMCH1-201ENST00000313860 B4DLN1 442 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 H3BRB1 525 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 PFDN6O15212 129 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ADCY6O43306 1168 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 SULT1B1O43704 296 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 KHDRBS3O75525 346 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 NPM3O75607 178 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ETS2P15036 469 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 QARSP47897 775 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 IFIT5Q13325 482 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 NFYCQ13952 458 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF618Q5T7W0 954 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 NECAB2Q7Z6G3 386 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF614Q8N883 585 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 KATNAL1Q9BW62 490 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 CAB39LQ9H9S4 337 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 DAPK2Q9UIK4 370 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 RCOR1Q9UKL0 485 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ANKRD30AQ9BXX3 1397 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 RARSP54136 660 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 YWHAGP61981 247 aaKnown RBP eCLIP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 S100A12P80511 92 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 DSG1Q02413 1049 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 SEMA3FQ13275 785 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 LBRQ14739 615 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF57Q68EA5 555 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 DCUN1D2Q6PH85 259 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 SMC5Q8IY18 1101 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 CLP1Q92989 425 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 L3MBTL2Q969R5 705 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 TUT1Q9H6E5 874 aaKnown RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms