RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 OSBPL10Q9BXB5 764 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 PIK3R2O00459 728 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 AFPP02771 609 aaKnown RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 DDIT3P35638 169 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 FNTAP49354 379 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 COPS2P61201 443 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 ABCE1P61221 599 aaKnown RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 CDR2Q01850 454 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 IQCB1Q15051 598 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 ANKRD12Q6UB98 2062 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 EIF4A1P60842 406 aaKnown RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 BCAS4Q8TDM0 211 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 GPHNQ9NQX3 736 aaPredicted RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 TUBGCP4Q9UGJ1 667 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 NIP7Q9Y221 180 aaKnown RBP eCLIP4.31□□□□□ -1.72
USH2A-201ENST00000307340 NPTXRO95502 500 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 IGHDP01880 384 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 NECTIN1Q15223 517 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 LINC00301Q8NCQ3 95 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 NELFBQ8WX92 580 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 ECEL1O95672 775 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 NLRP11P59045 1033 aaKnown RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 KRT76Q01546 638 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 SNX19Q92543 992 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 PRDM10Q9NQV6 1147 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 GSTA1P08263 222 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 ATF2P15336 505 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 TRAIPQ9BWF2 469 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 CNPY2Q9Y2B0 182 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 MAPTP10636 758 aaKnown RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 ATAD3BQ5T9A4 648 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 ITPRIPL1Q6GPH6 555 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 TMEM179Q6ZVK1 233 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 NOP53Q9NZM5 478 aaKnown RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 ATRNO75882 1429 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 TNS3Q68CZ2 1445 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 HSPD1P10809 573 aaKnown RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 RPS6KA2Q15349 733 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 ZNF394Q53GI3 561 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 TTC19Q6DKK2 380 aaPredicted RBP4.31□□□□□ -1.72
USH2A-201ENST00000307340 RNF207Q6ZRF8 634 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 MIER3Q7Z3K6 550 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 TRIM50Q86XT4 487 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 ANKRD36BP1Q96IX9 119 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 SH3GL1Q99961 368 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 SH3GL3Q99963 347 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 ZSWIM4Q9H7M6 989 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 SATB2Q9UPW6 733 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 TJP1Q07157 1748 aa4.31□□□□□ -1.72
USH2A-201ENST00000307340 MTHFD1LQ6UB35 978 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 LINC00523Q86TU6 105 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ANTXR1Q9H6X2 564 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 RSPH14Q9UHP6 348 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ECM2O94769 699 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.3□□□□□ -1.72
USH2A-201ENST00000307340 UNC13DQ70J99 1090 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 RSRC2Q7L4I2 434 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 NMRK1Q9NWW6 199 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 RRN3Q9NYV6 651 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CCDC160A6NGH7 325 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CYP2C9P11712 490 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 STX1BP61266 288 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 PEX6Q13608 980 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 MIS18BP1Q6P0N0 1132 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 NME9Q86XW9 330 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 KIAA1257Q9ULG3 409 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 AREL1O15033 823 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 MAN1A2O60476 641 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 NDUFA10O95299 355 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 POLR2MP0CAP2 368 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 GEN1Q17RS7 908 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CROCCP3Q8IVE0 287 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 TSPYL6Q8N831 410 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 XAGE3Q8WTP9 111 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 TAF1DQ9H5J8 278 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 ARHGAP42A6NI28 874 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 POTEMA6NI47 508 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 PDXKO00764 312 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 SLC2A3P11169 496 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ETFBP38117 255 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 TFDP2Q14188 446 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 RESP18Q5W5W9 173 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 POTEHQ6S545 545 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 POTEGQ6S5H5 508 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 PTF1AQ7RTS3 328 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ST13P4Q8IZP2 240 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 DISC1Q9NRI5 854 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 INTS9Q9NV88 658 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 ASIC3Q9UHC3 531 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ATP8A1Q9Y2Q0 1164 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 PARP3Q9Y6F1 533 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 COL5A2P05997 1499 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 BRAFP15056 766 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 U2AF2P26368 475 aaKnown RBP eCLIP4.3□□□□□ -1.72
USH2A-201ENST00000307340 PSMC4P43686 418 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CCDC97Q96F63 343 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 SLC38A7Q9NVC3 462 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 DPP7Q9UHL4 492 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 EXOC3O60645 756 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 FCGR1AP12314 374 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms