RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 BMT2Q1RMZ1 405 aa20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 CCNI2Q6ZMN8 369 aaPredicted RBP20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 RNF10Q8N5U6 811 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 BANK1Q8NDB2 785 aa20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 RBM46Q8TBY0 533 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 SLC35C1Q96A29 364 aa20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 TUFT1Q9NNX1 390 aa20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 STK32BQ9NY57 414 aa20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 MRPL11Q9Y3B7 192 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 ZMYM2Q9UBW7 1377 aa20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 RPL13P26373 211 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 EPHA7Q15375 998 aa20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 PLEKHA4Q9H4M7 779 aa20.12■□□□□ 0.81
SHKBP1-201ENST00000291842 MCM3P25205 808 aa20.11■□□□□ 0.81
SHKBP1-201ENST00000291842 CAP2P40123 477 aa20.11■□□□□ 0.81
SHKBP1-201ENST00000291842 FAM193AP78312 1265 aa20.11■□□□□ 0.81
SHKBP1-201ENST00000291842 MAEAQ7L5Y9 396 aa20.11■□□□□ 0.81
SHKBP1-201ENST00000291842 TXLNBQ8N3L3 684 aa20.11■□□□□ 0.81
SHKBP1-201ENST00000291842 PARVGQ9HBI0 331 aa20.11■□□□□ 0.81
SHKBP1-201ENST00000291842 OLFML3Q9NRN5 406 aa20.11■□□□□ 0.81
SHKBP1-201ENST00000291842 GCNT4Q9P109 453 aa20.11■□□□□ 0.81
SHKBP1-201ENST00000291842 SHTN1A0MZ66 631 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 FAM170AA1A519 330 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 RNASE9P60153 205 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 DGKZQ13574 1117 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 PLS1Q14651 629 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 PTPROQ16827 1216 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 NBPF9Q3BBW0 867 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 MAP9Q49MG5 647 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 MMGT1Q8N4V1 131 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 LUC7LQ9NQ29 371 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 RBM12Q9NTZ6 932 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 GAP43P17677 238 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 INPP5BP32019 993 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 PAFAH1B1P43034 410 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 TRAF1Q13077 416 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 HSP90B2PQ58FF3 399 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 SIX2Q9NPC8 291 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 PLCB1Q9NQ66 1216 aa20.1■□□□□ 0.81
SHKBP1-201ENST00000291842 IPO5O00410 1097 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 LMAN1P49257 510 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 CCDC70Q6NSX1 233 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 RTKN2Q8IZC4 609 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 SELENOOQ9BVL4 669 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 GOLPH3Q9H4A6 298 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 HPCAL4Q9UM19 191 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 ATAD5Q96QE3 1844 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 CYP2J2P51589 502 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 GBP6Q6ZN66 633 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 TRMT1LQ7Z2T5 733 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 ZNF572Q7Z3I7 529 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 FAM178BQ8IXR5 827 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 FAM186BQ8IYM0 893 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 RIN2Q8WYP3 895 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 LXNQ9BS40 222 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 ZNF341Q9BYN7 854 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 METTL14Q9HCE5 456 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 COL20A1Q9P218 1284 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 CCPG1Q9ULG6 757 aa20.09■□□□□ 0.81
SHKBP1-201ENST00000291842 SLC16A3O15427 465 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-201ENST00000291842 DPEP1P16444 411 aa20.08■□□□□ 0.81
SHKBP1-201ENST00000291842 ITGB5P18084 799 aa20.08■□□□□ 0.81
SHKBP1-201ENST00000291842 ODR4Q5SWX8 454 aa20.08■□□□□ 0.81
SHKBP1-201ENST00000291842 CPXCR1Q8N123 301 aa20.08■□□□□ 0.81
SHKBP1-201ENST00000291842 MSL3Q8N5Y2 521 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-201ENST00000291842 FIZ1Q96SL8 496 aa20.08■□□□□ 0.81
SHKBP1-201ENST00000291842 A0A0U1RQG5 324 aaPredicted RBP20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 NFIBO00712 420 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 ZNF720Q7Z2F6 126 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 IL31RAQ8NI17 732 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 NACC1Q96RE7 527 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 SH2D3AQ9BRG2 576 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 TEKT3Q9BXF9 490 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 WDR11Q9BZH6 1224 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 EHMT1Q9H9B1 1298 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 HOMER2Q9NSB8 354 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 FEM1BQ9UK73 627 aa20.08■□□□□ 0.8
SHKBP1-201ENST00000291842 TNS1Q9HBL0 1735 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 GRID2IPA4D2P6 1211 aa20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 GRIPAP1Q4V328 841 aa20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 FAM160B2Q86V87 743 aa20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 RDH13Q8NBN7 331 aa20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 BORCS6Q96GS4 357 aa20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 EIF3DO15371 548 aaKnown RBP eCLIP20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 PSMC2P35998 433 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 CAMKK2Q96RR4 588 aa20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 PSMD1Q99460 953 aa20.07■□□□□ 0.8
SHKBP1-201ENST00000291842 FRMPD4Q14CM0 1322 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 WNT10BO00744 389 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 GFPT2O94808 682 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 SYF2O95926 243 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 TRIM49P0CI25 452 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 TRIM49CP0CI26 452 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 KCNA3P22001 575 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 NOP2P46087 812 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 CFAP221Q4G0U5 840 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 MEI1Q5TIA1 1274 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 MXRA8Q9BRK3 442 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 ACBD3Q9H3P7 528 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 NAGPAQ9UK23 515 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms