RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 SLFN12Q8IYM2 578 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 CRYGNQ8WXF5 182 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 TBC1D5Q92609 795 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 FAXDC2Q96IV6 333 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 MS4A14Q96JA4 679 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 OSBPL7Q9BZF2 842 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 TANGO6Q9C0B7 1094 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 TPX2Q9ULW0 747 aaKnown RBP11.32□□□□□ -0.6
SKA1-201ENST00000285116 PCDHA12Q9UN75 941 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 PLAAQ9Y263 795 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 GCOM1H8Y6P7 765 aaPredicted RBP11.32□□□□□ -0.6
SKA1-201ENST00000285116 ZBTB5O15062 677 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 TRAPPC3O43617 180 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 BUB1O43683 1085 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 PLA2G4BP0C869 781 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 MYZAPP0CAP1 466 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 ECHS1P30084 290 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 LRCH2Q5VUJ6 765 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 COA7Q96BR5 231 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 UBA5Q9GZZ9 404 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 EMILIN3Q9NT22 766 aa11.32□□□□□ -0.6
SKA1-201ENST00000285116 ESYT3A0FGR9 886 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 DNM1LO00429 736 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 CETN3O15182 167 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 KIF4AO95239 1232 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 HPDP32754 393 aaPredicted RBP11.31□□□□□ -0.6
SKA1-201ENST00000285116 JAM2P57087 298 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 GPSM2P81274 684 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 XRCC4Q13426 336 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 LRRC41Q15345 812 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 KIAA0753Q2KHM9 967 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 NBPF9Q3BBW0 867 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 ADGRF4Q8IZF3 695 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 CEP120Q8N960 986 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 SCLT1Q96NL6 688 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 SLITRK6Q9H5Y7 841 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 NLRC4Q9NPP4 1024 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 HAUS2Q9NVX0 235 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 STXBP5LQ9Y2K9 1186 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 C5orf60A6NFR6 353 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 H0YGN5 161 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 PDXKO00764 312 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 MMP10P09238 476 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 CLNS1AP54105 237 aaKnown RBP11.31□□□□□ -0.6
SKA1-201ENST00000285116 AP3B2Q13367 1082 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 BIRC3Q13489 604 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 RPS6KA1Q15418 735 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 TLDC1Q6P9B6 456 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 LRRC45Q96CN5 670 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 VAT1LQ9HCJ6 419 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 SUCLA2Q9P2R7 463 aaPredicted RBP11.31□□□□□ -0.6
SKA1-201ENST00000285116 SLC12A6Q9UHW9 1150 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.31□□□□□ -0.6
SKA1-201ENST00000285116 NFS1Q9Y697 457 aa11.31□□□□□ -0.6
SKA1-201ENST00000285116 RBBP6Q7Z6E9 1792 aaKnown RBP11.31□□□□□ -0.6
SKA1-201ENST00000285116 ZSCAN5CA6NGD5 496 aaPredicted RBP11.3□□□□□ -0.6
SKA1-201ENST00000285116 PAEPP09466 180 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 SCTRP47872 440 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 TNNI2P48788 182 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 PPP2R5AQ15172 486 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 AGBL2Q5U5Z8 902 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 RUFY4Q6ZNE9 571 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 CACNA2D3Q8IZS8 1091 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 ANKRD13CQ8N6S4 541 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 LMBR1Q8WVP7 490 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 TAF4BQ92750 862 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 SEC16BQ96JE7 1060 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 KRT12Q99456 494 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 TRIM6Q9C030 488 aaPredicted RBP11.3□□□□□ -0.6
SKA1-201ENST00000285116 METTL14Q9HCE5 456 aaKnown RBP11.3□□□□□ -0.6
SKA1-201ENST00000285116 DIS3Q9Y2L1 958 aaKnown RBP11.3□□□□□ -0.6
SKA1-201ENST00000285116 KIF3CO14782 793 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 RAD51CO43502 376 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 GHRP10912 638 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 VASPP50552 380 aaPredicted RBP11.3□□□□□ -0.6
SKA1-201ENST00000285116 KCNH2Q12809 1159 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 MTMR3Q13615 1198 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 Q4G0T1 1027 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 TMC4Q7Z404 712 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 DHX36Q9H2U1 1008 aaKnown RBP11.3□□□□□ -0.6
SKA1-201ENST00000285116 GGA1Q9UJY5 639 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 NCANO14594 1321 aa11.3□□□□□ -0.6
SKA1-201ENST00000285116 FRMPD2Q68DX3 1309 aaPredicted RBP11.3□□□□□ -0.6
SKA1-201ENST00000285116 F8W031 263 aaPredicted RBP11.29□□□□□ -0.6
SKA1-201ENST00000285116 MGRN1O60291 552 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 DNAJC8O75937 253 aaPredicted RBP11.29□□□□□ -0.6
SKA1-201ENST00000285116 NEBLO76041 1014 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 FTCDO95954 541 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 AFPP02771 609 aaKnown RBP11.29□□□□□ -0.6
SKA1-201ENST00000285116 SSBP05455 408 aaKnown RBP eCLIP11.29□□□□□ -0.6
SKA1-201ENST00000285116 SLC8A3P57103 927 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 SPIRE1Q08AE8 756 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 ADAM9Q13443 819 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 RAPGEF1Q13905 1077 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 ARSHQ5FYA8 562 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 GPBP1Q86WP2 473 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 SYCE1Q8N0S2 351 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.29□□□□□ -0.62e-6■■■■□ 23.3
SKA1-201ENST00000285116 FGFBP2Q9BYJ0 223 aa11.29□□□□□ -0.6
SKA1-201ENST00000285116 NAGPAQ9UK23 515 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms