RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 TRIM50Q86XT4 487 aa18.08■□□□□ 0.48
PHRF1-201ENST00000264555 TTC16Q8NEE8 873 aa18.08■□□□□ 0.48
PHRF1-201ENST00000264555 CC2D1AQ6P1N0 951 aaPredicted RBP18.08■□□□□ 0.48
PHRF1-201ENST00000264555 CALR3Q96L12 384 aaKnown RBP18.08■□□□□ 0.48
PHRF1-201ENST00000264555 MSTO1Q9BUK6 570 aa18.08■□□□□ 0.48
PHRF1-201ENST00000264555 FBXO40Q9UH90 709 aa18.08■□□□□ 0.48
PHRF1-201ENST00000264555 ATP8A1Q9Y2Q0 1164 aa18.08■□□□□ 0.48
PHRF1-201ENST00000264555 DHX9Q08211 1270 aaKnown RBP18.08■□□□□ 0.48
PHRF1-201ENST00000264555 MTF1Q14872 753 aa18.08■□□□□ 0.48
PHRF1-201ENST00000264555 LXNQ9BS40 222 aa18.08■□□□□ 0.48
PHRF1-201ENST00000264555 TUFT1Q9NNX1 390 aa18.08■□□□□ 0.48
PHRF1-201ENST00000264555 TBX3O15119 743 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 DMTNQ08495 405 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 EPHA7Q15375 998 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 STXBP2Q15833 593 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 PROCA1Q8NCQ7 364 aaPredicted RBP18.07■□□□□ 0.48
PHRF1-201ENST00000264555 AP1M1Q9BXS5 423 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 MAD2L2Q9UI95 211 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 ZHX2Q9Y6X8 837 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 ESYT2A0FGR8 921 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 MED7O43513 233 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 SRGNP10124 158 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 DAGLBQ8NCG7 672 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 GIMAP8Q8ND71 665 aaPredicted RBP18.07■□□□□ 0.48
PHRF1-201ENST00000264555 CCDC110Q8TBZ0 833 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 MED10Q9BTT4 135 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 PDXKO00764 312 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 XPOTO43592 962 aaKnown RBP18.07■□□□□ 0.48
PHRF1-201ENST00000264555 DR1Q01658 176 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 GRIN1Q05586 938 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 CEP55Q53EZ4 464 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 SNRNP48Q6IEG0 339 aaKnown RBP18.07■□□□□ 0.48
PHRF1-201ENST00000264555 DNAJC24Q6P3W2 148 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 EEPD1Q7L9B9 569 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 ARMC9Q7Z3E5 817 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 STMN2Q93045 179 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 RNF146Q9NTX7 359 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 NDUFB10O96000 172 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 ATP2A3Q93084 1043 aa18.07■□□□□ 0.48
PHRF1-201ENST00000264555 COL5A2P05997 1499 aaPredicted RBP18.06■□□□□ 0.48
PHRF1-201ENST00000264555 TCRBV5S4A2TA0A5A2 114 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 CIB2O75838 187 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 RINT1Q6NUQ1 792 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 PDXDC1Q6P996 788 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 LDHDQ86WU2 507 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 WRNIP1Q96S55 665 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 POLD4Q9HCU8 107 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 GPR162Q16538 588 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 ZBTB33Q86T24 672 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 WDR24Q96S15 920 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 KLHL14Q9P2G3 628 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 MIF4GDA9UHW6 222 aaKnown RBP18.06■□□□□ 0.48
PHRF1-201ENST00000264555 CAPN9O14815 690 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 HGSO14964 777 aaPredicted RBP18.06■□□□□ 0.48
PHRF1-201ENST00000264555 GCLMP48507 274 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 CCDC117Q8IWD4 279 aaPredicted RBP18.06■□□□□ 0.48
PHRF1-201ENST00000264555 TMEM60Q9H2L4 133 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 SLMAPQ14BN4 828 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 PDZD4Q76G19 769 aaPredicted RBP18.06■□□□□ 0.48
PHRF1-201ENST00000264555 RWDD2BP57060 319 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 PSMC5P62195 406 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 CCDC62Q6P9F0 684 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 CLEC10AQ8IUN9 316 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 FUCA2Q9BTY2 467 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 HPSEQ9Y251 543 aa18.06■□□□□ 0.48
PHRF1-201ENST00000264555 SLC16A4O15374 487 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 FGGP02679 453 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 STK4Q13043 487 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 RASGRP2Q7LDG7 609 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 TC2NQ8N9U0 490 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 PPFIBP2Q8ND30 876 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 TROVE2P10155 538 aaKnown RBP eCLIP18.05■□□□□ 0.48
PHRF1-201ENST00000264555 CHRNA5P30532 468 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 ZNF131P52739 623 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 SNX1Q13596 522 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 MAP7D1Q3KQU3 841 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 OSBPL9Q96SU4 736 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 JMJD4Q9H9V9 463 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 IFT122Q9HBG6 1241 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 RFX1P22670 979 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 VAMP7P51809 220 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 SPP2Q13103 211 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 NNTQ13423 1086 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 PNMA8AQ86V59 439 aaPredicted RBP18.05■□□□□ 0.48
PHRF1-201ENST00000264555 TCP11Q8WWU5 503 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 HPS3Q969F9 1004 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 SERPINA10Q9UK55 444 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 NAA30Q147X3 362 aaPredicted RBP18.05■□□□□ 0.48
PHRF1-201ENST00000264555 SEC23AQ15436 765 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 FAM47CQ5HY64 1035 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 NXF1Q9UBU9 619 aaKnown RBP18.05■□□□□ 0.48
PHRF1-201ENST00000264555 NFU1Q9UMS0 254 aa18.05■□□□□ 0.48
PHRF1-201ENST00000264555 SF3A3Q12874 501 aaKnown RBP eCLIP18.04■□□□□ 0.481e-6■■■■■ 28.7
PHRF1-201ENST00000264555 NSMCE1Q8WV22 266 aa18.04■□□□□ 0.48
PHRF1-201ENST00000264555 ANAPC5Q9UJX4 755 aa18.04■□□□□ 0.48
PHRF1-201ENST00000264555 BCL9O00512 1426 aa18.04■□□□□ 0.48
PHRF1-201ENST00000264555 MYMKA6NI61 221 aa18.04■□□□□ 0.48
PHRF1-201ENST00000264555 SGK1O00141 431 aa18.04■□□□□ 0.48
PHRF1-201ENST00000264555 FXR2P51116 673 aaKnown RBP eCLIP18.04■□□□□ 0.484e-7■■■■□ 23.2
PHRF1-201ENST00000264555 NTRK3Q16288 839 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms