RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ALKBH5Q6P6C2 394 aaKnown RBP20.55■□□□□ 0.88
UPF1-201ENST00000262803 PCGF5Q86SE9 256 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 PDLIM2Q96JY6 352 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 NARFQ9UHQ1 456 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 TET3O43151 1660 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 TRPM1Q7Z4N2 1603 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 USP17L5A8MUK1 530 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 MIF4GDA9UHW6 222 aaKnown RBP20.54■□□□□ 0.88
UPF1-201ENST00000262803 ARAP3Q8WWN8 1544 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 HECW2Q9P2P5 1572 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 GOLGA8SH3BPF8 625 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 TSTA3Q13630 321 aaPredicted RBP20.54■□□□□ 0.88
UPF1-201ENST00000262803 ZKSCAN8Q15776 578 aaPredicted RBP20.54■□□□□ 0.88
UPF1-201ENST00000262803 KCNV1Q6PIU1 500 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 ADCY10Q96PN6 1610 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 SNAP23O00161 211 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 BAG2O95816 211 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 CDR2Q01850 454 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 ADCY1Q08828 1119 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 SNCBQ16143 134 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 RNF219Q5W0B1 726 aaPredicted RBP20.54■□□□□ 0.88
UPF1-201ENST00000262803 ATG16L1Q676U5 607 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 BPIFA3Q9BQP9 254 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 SUGT1Q9Y2Z0 365 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 MAP3K4Q9Y6R4 1608 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 RAD17O75943 681 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 ALS2CLQ60I27 953 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 ERICH1Q86X53 443 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 CHMP6Q96FZ7 201 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 SEL1LQ9UBV2 794 aa20.54■□□□□ 0.88
UPF1-201ENST00000262803 TMEM247A6NEH6 219 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 PRELPP51888 382 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 BEST2Q8NFU1 509 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 GIPC2Q8TF65 315 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 MAGEB5Q9BZ81 275 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 BCORL1Q5H9F3 1711 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 CCDC188H7C350 402 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 ZBED1O96006 694 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 CALB1P05937 261 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 INPP1P49441 399 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 DDX27Q96GQ7 796 aaKnown RBP20.53■□□□□ 0.88
UPF1-201ENST00000262803 TRPV6Q9H1D0 765 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 NXF1Q9UBU9 619 aaKnown RBP20.53■□□□□ 0.88
UPF1-201ENST00000262803 ZBTB5O15062 677 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 SESN3P58005 492 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 CCDC144BQ3MJ40 725 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 CENPUQ71F23 418 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 NSUN6Q8TEA1 469 aaKnown RBP20.53■□□□□ 0.88
UPF1-201ENST00000262803 BHMT2Q9H2M3 363 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 SLC13A4Q9UKG4 626 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 A2ML1A8K2U0 1454 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 CUL1Q13616 776 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 SCG3Q8WXD2 468 aaKnown RBP20.53■□□□□ 0.88
UPF1-201ENST00000262803 SERPINI1Q99574 410 aa20.53■□□□□ 0.88
UPF1-201ENST00000262803 OSBPL5Q9H0X9 879 aaPredicted RBP20.53■□□□□ 0.88
UPF1-201ENST00000262803 ABCC3O15438 1527 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 LGALS16A8MUM7 142 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 GSTA4O15217 222 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 TBXAS1P24557 533 aaPredicted RBP20.52■□□□□ 0.88
UPF1-201ENST00000262803 RWDD2BP57060 319 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 UNC13DQ70J99 1090 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 PDIK1LQ8N165 341 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 PDZD8Q8NEN9 1154 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 ABHD10Q9NUJ1 306 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 SRP68Q9UHB9 627 aaKnown RBP20.52■□□□□ 0.88
UPF1-201ENST00000262803 CYP2D6P10635 497 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 CDC42EP1Q00587 391 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 PFKFB3Q16875 520 aaPredicted RBP20.52■□□□□ 0.88
UPF1-201ENST00000262803 C7orf31Q8N865 590 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 OXER1Q8TDS5 423 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 KLC2Q9H0B6 622 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 TJP3O95049 919 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 SLCO1A2P46721 670 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 PDCD2Q16342 344 aaPredicted RBP20.52■□□□□ 0.88
UPF1-201ENST00000262803 TAF1BQ53T94 588 aaPredicted RBP20.52■□□□□ 0.88
UPF1-201ENST00000262803 AP1M1Q9BXS5 423 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 FGFR1OP2Q9NVK5 253 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 TRIM49BA6NDI0 452 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 MYL3P08590 195 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 CAV1Q03135 178 aa20.52■□□□□ 0.88
UPF1-201ENST00000262803 NVLO15381 856 aaKnown RBP20.51■□□□□ 0.87
UPF1-201ENST00000262803 DDX5P17844 614 aaKnown RBP20.51■□□□□ 0.87
UPF1-201ENST00000262803 TTLL4Q14679 1199 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 MAPK6Q16659 721 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 EMBQ6PCB8 327 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 LRRC31Q6UY01 552 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 ZBTB18Q99592 522 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 LY9Q9HBG7 655 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 ASNSD1Q9NWL6 643 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 PMLP29590 882 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 CRKP46108 304 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 EFHBQ8N7U6 833 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 TMEM35BQ8NCS4 154 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 FMO2Q99518 471 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 NOVA2Q9UNW9 492 aaKnown RBP20.51■□□□□ 0.87
UPF1-201ENST00000262803 PODXLO00592 558 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 NR1D1P20393 614 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 SERPINB6P35237 376 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 RCSD1Q6JBY9 416 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 ZBTB33Q86T24 672 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms