RNA–Protein interactions for RNA: YKL028W

TFA1, Transcript of TFIIE large subunit, yeast

Gene TFA1, Length 1,449 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFA1	YKL028W	GET4	Q12125	312 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	ATG34	Q12292	412 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	CKI1	P20485	582 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	YCP4	P25349	247 aa	Known RBP	4.09	□□□□□ -1.75
TFA1	YKL028W	YCR006C	P25350	157 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	PRR1	P28708	518 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	APE2	P32454	952 aa	Known RBP	4.09	□□□□□ -1.75
TFA1	YKL028W	OCT1	P35999	772 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	COS9	P36034	407 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	YKL162C	P36052	402 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	LAG1	P38703	411 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	YHB1	P39676	399 aa	Known RBP	4.09	□□□□□ -1.75
TFA1	YKL028W	DSE1	P40077	573 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	HXT9	P40885	567 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	MRX5	P47007	382 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	ESBP6	P53918	673 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	HXT11	P54862	567 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	MUK1	Q02866	612 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	IZH1	Q03419	316 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	YMR206W	Q03695	313 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	ENT5	Q03769	411 aa	Known RBP	4.09	□□□□□ -1.75
TFA1	YKL028W	SMP3	Q04174	516 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	UBX2	Q04228	584 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	GMC2	Q06201	188 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	YLL056C	Q12177	298 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	YOR029W	Q12243	111 aa		4.09	□□□□□ -1.75
TFA1	YKL028W	BAR1	P12630	587 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	CLN3	P13365	580 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	MET16	P18408	261 aa	Predicted RBP	4.08	□□□□□ -1.76
TFA1	YKL028W	PMA2	P19657	947 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	OSM1	P21375	501 aa	Known RBP	4.08	□□□□□ -1.76
TFA1	YKL028W	CTR86	P25355	563 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	PBN1	P25580	416 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	ITR1	P30605	584 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	GCG1	P32656	232 aa	Known RBP	4.08	□□□□□ -1.76
TFA1	YKL028W	SKN1	P33336	771 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	CBR1	P38626	284 aa	Known RBP	4.08	□□□□□ -1.76
TFA1	YKL028W	MMS21	P38632	267 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	BDH2	P39713	417 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	ERV46	P39727	415 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	YIL060W	P40519	144 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	HSH155	P49955	971 aa	Known RBP	4.08	□□□□□ -1.76
TFA1	YKL028W	YGR168C	P53293	376 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	BET4	Q00618	327 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	MMT1	Q03218	510 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	PAM18	Q07914	168 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	LDS2	Q08218	356 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	YOR389W	Q08912	624 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	SLF1	Q12034	447 aa	Known RBP	4.08	□□□□□ -1.76
TFA1	YKL028W	SIA1	Q12212	622 aa		4.08	□□□□□ -1.76
TFA1	YKL028W	SEC3	P33332	1336 aa	Known RBP	4.07	□□□□□ -1.76
TFA1	YKL028W	HIS4	P00815	799 aa	Known RBP	4.07	□□□□□ -1.76
TFA1	YKL028W	MATALPHA1	P0CY06	175 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	HMLALPHA1	P0CY07	175 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	ARF1	P11076	181 aa	Known RBP	4.07	□□□□□ -1.76
TFA1	YKL028W	PRP16	P15938	1071 aa	Predicted RBP	4.07	□□□□□ -1.76
TFA1	YKL028W	MAK32	P23060	363 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	RRT12	P25381	491 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	MXR2	P25566	168 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	HIS2	P38635	335 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	PCL5	P38794	229 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	MMF1	P40185	145 aa	Known RBP	4.07	□□□□□ -1.76
TFA1	YKL028W	UTP18	P40362	594 aa	Predicted RBP	4.07	□□□□□ -1.76
TFA1	YKL028W	HIT1	P46973	164 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
TFA1	YKL028W	GPI15	P53961	229 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	RLI1	Q03195	608 aa	Known RBP	4.07	□□□□□ -1.76
TFA1	YKL028W	RVB1	Q03940	463 aa	Known RBP	4.07	□□□□□ -1.76
TFA1	YKL028W	MCH4	Q08268	501 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	ACF2	Q12168	779 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	CMC2	Q3E7A4	109 aa		4.07	□□□□□ -1.76
TFA1	YKL028W	ADH2	P00331	348 aa	Known RBP	4.06	□□□□□ -1.76
TFA1	YKL028W	RAD7	P06779	565 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	NHP6B	P11633	99 aa	Known RBP	4.06	□□□□□ -1.76
TFA1	YKL028W	COQ1	P18900	473 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	ZRC1	P20107	442 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	PPZ1	P26570	692 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	RPS5	P26783	225 aa	Known RBP	4.06	□□□□□ -1.76
TFA1	YKL028W	PPA2	P28239	310 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	DOA1	P36037	715 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	BIG1	P38813	335 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	EXO1	P39875	702 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	FAU1	P40099	211 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	COX16	P47081	118 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	PKP2	P53170	491 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	BIO4	P53630	237 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	RHO4	Q00246	291 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	TIM44	Q01852	431 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	YPL014W	Q02606	381 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	NAT4	Q04751	285 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	PIG1	Q06216	648 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	GRS2	Q06817	618 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	SDO1	Q07953	250 aa	Known RBP	4.06	□□□□□ -1.76
TFA1	YKL028W	LAG2	Q92325	660 aa		4.06	□□□□□ -1.76
TFA1	YKL028W	YSR3	P23501	404 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	RPL24B	P24000	155 aa	Known RBP	4.05	□□□□□ -1.76
TFA1	YKL028W	VMA5	P31412	392 aa	Known RBP	4.05	□□□□□ -1.76
TFA1	YKL028W	ZUO1	P32527	433 aa	Known RBP	4.05	□□□□□ -1.76
TFA1	YKL028W	UTR4	P32626	227 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	TOA2	P32774	122 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 59.1 ms