RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	MNL1	P38888	796 aa		4.46	□□□□□ -1.7
CAF16	YFL028C	RSM25	P40496	264 aa		4.46	□□□□□ -1.7
CAF16	YFL028C	HMS2	P47175	358 aa		4.46	□□□□□ -1.7
CAF16	YFL028C	VPS74	Q06385	345 aa		4.46	□□□□□ -1.7
CAF16	YFL028C	TLG2	Q08144	397 aa		4.46	□□□□□ -1.7
CAF16	YFL028C	REX4	Q08237	289 aa		4.46	□□□□□ -1.7
CAF16	YFL028C	TAD3	Q9URQ3	322 aa		4.46	□□□□□ -1.7
CAF16	YFL028C	SPC110	P32380	944 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	ARC40	P38328	384 aa	Known RBP	4.45	□□□□□ -1.7
CAF16	YFL028C	STN1	P38960	494 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	TVP23	P38962	199 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	GAT2	P40209	560 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	YIL152W	P40455	235 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	CHS6	P40955	746 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	GWT1	P47026	490 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	NBP1	P52919	319 aa	Predicted RBP	4.45	□□□□□ -1.7
CAF16	YFL028C	RTT102	P53330	157 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	PNG1	Q02890	363 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	CUR1	Q06469	252 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	NDL1	Q06568	189 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	SNA4	Q07549	140 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	PSY3	Q12318	242 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	UBR2	Q07963	1872 aa		4.45	□□□□□ -1.7
CAF16	YFL028C	CDC21	P06785	304 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	NFT1	P0CE68	1218 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	RAD57	P25301	460 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	YCR100C	P25606	316 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	COT1	P32798	439 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	ATO2	P32907	282 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	YFL040W	P43562	540 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	TOS3	P43637	560 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	FYV8	P46949	817 aa	Known RBP	4.44	□□□□□ -1.7
CAF16	YFL028C	IKS1	P47042	667 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	PHB2	P50085	310 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	YNL146W	P53906	100 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	YDR541C	Q03049	344 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	TAF12	Q03761	539 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	YFH1	Q07540	174 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	YOL075C	Q08234	1294 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	IES4	Q08561	116 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	AFT2	Q08957	416 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	REX3	Q12090	404 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	HIF1	Q12373	385 aa		4.44	□□□□□ -1.7
CAF16	YFL028C	ILV5	P06168	395 aa	Known RBP	4.43	□□□□□ -1.7
CAF16	YFL028C	IMA3	P0CW40	589 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	IMA4	P0CW41	589 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	PSO2	P30620	661 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	CYS4	P32582	507 aa	Known RBP	4.43	□□□□□ -1.7
CAF16	YFL028C	YEL043W	P32618	956 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	TMT1	P32643	299 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.43	□□□□□ -1.7	not detected
CAF16	YFL028C	PTR2	P32901	601 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	INM1	P38710	295 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	LYS1	P38998	373 aa	RIP-Chip data	4.43	□□□□□ -1.7	not detected
CAF16	YFL028C	ALD5	P40047	520 aa	Known RBP	4.43	□□□□□ -1.7
CAF16	YFL028C	YIL169C	P40442	995 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	NAS2	P40555	220 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	AIP1	P46680	615 aa	Known RBP	4.43	□□□□□ -1.7
CAF16	YFL028C	FRE4	P53746	719 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	AQR1	P53943	586 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	ADA2	Q02336	434 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	FMP42	Q04991	504 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	IMA2	Q08295	589 aa		4.43	□□□□□ -1.7
CAF16	YFL028C	COX4	P04037	155 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	OM45	P16547	393 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	UBA1	P22515	1024 aa	Known RBP	4.42	□□□□□ -1.7
CAF16	YFL028C	CTR86	P25355	563 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	YCR043C	P25361	127 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	YCR022C	P25620	114 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	FAA1	P30624	700 aa	Known RBP	4.42	□□□□□ -1.7
CAF16	YFL028C	DRE2	P36152	348 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	RIM2	P38127	377 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	QDR3	P38227	689 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	STP2	P38704	541 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	MET30	P39014	640 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	YAL037W	P39728	267 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	YER079W	P40052	210 aa	Known RBP	4.42	□□□□□ -1.7
CAF16	YFL028C	BRO1	P48582	844 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	ASN2	P49090	572 aa	Known RBP	4.42	□□□□□ -1.7
CAF16	YFL028C	GPI15	P53961	229 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	ECM7	Q06200	448 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	YPR022C	Q12139	1133 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	RUP1	Q12242	671 aa		4.42	□□□□□ -1.7
CAF16	YFL028C	YPR117W	Q06116	2489 aa		4.41	□□□□□ -1.7
CAF16	YFL028C	CHS1	P08004	1131 aa		4.41	□□□□□ -1.7
CAF16	YFL028C	SCH9	P11792	824 aa	Known RBP	4.41	□□□□□ -1.7
CAF16	YFL028C	NIP1	P32497	812 aa	Known RBP	4.41	□□□□□ -1.7
CAF16	YFL028C	KAP104	P38217	918 aa	Known RBP	4.41	□□□□□ -1.7
CAF16	YFL028C	SHO1	P40073	367 aa		4.41	□□□□□ -1.7
CAF16	YFL028C	YPS6	P40583	537 aa		4.41	□□□□□ -1.7
CAF16	YFL028C	DIM1	P41819	318 aa	Known RBP	4.41	□□□□□ -1.7
CAF16	YFL028C	PDR16	P53860	351 aa	Known RBP	4.41	□□□□□ -1.7
CAF16	YFL028C	YNL143C	P53908	130 aa		4.41	□□□□□ -1.7
CAF16	YFL028C	EBS1	Q03466	884 aa	Known RBP	4.41	□□□□□ -1.7
CAF16	YFL028C	SNT309	Q06091	175 aa	Predicted RBP	4.41	□□□□□ -1.7
CAF16	YFL028C	YAP7	Q08182	245 aa		4.41	□□□□□ -1.7
CAF16	YFL028C	GEP3	Q08622	556 aa		4.41	□□□□□ -1.7
CAF16	YFL028C	ORT1	Q12375	292 aa		4.41	□□□□□ -1.7
CAF16	YFL028C	LAA1	P39526	2014 aa		4.4	□□□□□ -1.7
CAF16	YFL028C	CDC37	P06101	506 aa	Known RBP	4.4	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 26.4 ms