RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W RPH1P39956 796 aa1.11□□□□□ -2.23
CDC39YCR093W YIA6P40556 373 aa1.11□□□□□ -2.23
CDC39YCR093W DSN1P40568 576 aa1.11□□□□□ -2.23
CDC39YCR093W IDP2P41939 412 aa1.11□□□□□ -2.23
CDC39YCR093W YNL092WP53934 400 aa1.11□□□□□ -2.23
CDC39YCR093W EGD1Q02642 157 aaKnown RBP1.11□□□□□ -2.23
CDC39YCR093W YDR131CQ03899 556 aa1.11□□□□□ -2.23
CDC39YCR093W RBA50Q04418 439 aa1.11□□□□□ -2.23
CDC39YCR093W YPR078CQ06813 372 aa1.11□□□□□ -2.23
CDC39YCR093W CMS1Q07897 291 aaKnown RBP1.11□□□□□ -2.23
CDC39YCR093W MED4Q12343 284 aa1.11□□□□□ -2.23
CDC39YCR093W NCA2Q12374 616 aa1.11□□□□□ -2.23
CDC39YCR093W STE2D6VTK4 431 aa1.11□□□□□ -2.23
CDC39YCR093W ILV1P00927 576 aaKnown RBP1.11□□□□□ -2.23
CDC39YCR093W SEC63P14906 663 aa1.11□□□□□ -2.23
CDC39YCR093W PUT3P25502 979 aaPredicted RBP1.11□□□□□ -2.23
CDC39YCR093W EMC2P47133 292 aaKnown RBP1.11□□□□□ -2.23
CDC39YCR093W PRP3Q03338 469 aaPredicted RBP1.11□□□□□ -2.23
CDC39YCR093W YMR034CQ05131 434 aaPredicted RBP1.11□□□□□ -2.23
CDC39YCR093W YLR456WQ06199 204 aa1.11□□□□□ -2.23
CDC39YCR093W ARR1Q06596 294 aa1.11□□□□□ -2.23
CDC39YCR093W SYO1Q07395 620 aa1.11□□□□□ -2.23
CDC39YCR093W MES1P00958 751 aaKnown RBP1.11□□□□□ -2.23
CDC39YCR093W KRR1P25586 316 aaPredicted RBP1.11□□□□□ -2.23
CDC39YCR093W TCM62P38228 572 aaKnown RBP1.11□□□□□ -2.23
CDC39YCR093W RRT2P38332 387 aa1.11□□□□□ -2.23
CDC39YCR093W SCD6P45978 349 aaKnown RBP RIP-Chip data1.11□□□□□ -2.23not detected
CDC39YCR093W PYK2P52489 506 aaKnown RBP1.11□□□□□ -2.23
CDC39YCR093W SDT1P53078 280 aa1.11□□□□□ -2.23
CDC39YCR093W YML122CQ03207 126 aa1.11□□□□□ -2.23
CDC39YCR093W PHO92Q06390 306 aa1.11□□□□□ -2.23
CDC39YCR093W YOR387CQ08910 206 aa1.11□□□□□ -2.23
CDC39YCR093W RKM1Q08961 583 aaPredicted RBP1.11□□□□□ -2.23
CDC39YCR093W PFK27Q12471 397 aaPredicted RBP1.11□□□□□ -2.23
CDC39YCR093W ADE4P04046 510 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W URA10P30402 227 aa1.1□□□□□ -2.23
CDC39YCR093W SPC110P32380 944 aa1.1□□□□□ -2.23
CDC39YCR093W SOL2P37262 315 aa1.1□□□□□ -2.23
CDC39YCR093W ECM34P38728 170 aa1.1□□□□□ -2.23
CDC39YCR093W RRP4P38792 359 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W YAL037WP39728 267 aa1.1□□□□□ -2.23
CDC39YCR093W LYS12P40495 371 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W CDC1P40986 491 aa1.1□□□□□ -2.23
CDC39YCR093W COG7P53195 279 aa1.1□□□□□ -2.23
CDC39YCR093W SWC4P53201 476 aa1.1□□□□□ -2.23
CDC39YCR093W YGR117CP53270 476 aa1.1□□□□□ -2.23
CDC39YCR093W RPA49Q01080 415 aaPredicted RBP1.1□□□□□ -2.23
CDC39YCR093W MAK32P23060 363 aa1.1□□□□□ -2.23
CDC39YCR093W FRE1P32791 686 aa1.1□□□□□ -2.23
CDC39YCR093W MSN2P33748 704 aa1.1□□□□□ -2.23
CDC39YCR093W SMC2P38989 1170 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W ERV46P39727 415 aa1.1□□□□□ -2.23
CDC39YCR093W YMR134WP40207 237 aa1.1□□□□□ -2.23
CDC39YCR093W TFG2P41896 400 aaPredicted RBP1.1□□□□□ -2.23
CDC39YCR093W COX16P47081 118 aa1.1□□□□□ -2.23
CDC39YCR093W RHO5P53879 331 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W RVB1Q03940 463 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W PBA1Q05778 276 aa1.1□□□□□ -2.23
CDC39YCR093W SPH1Q06160 661 aa1.1□□□□□ -2.23
CDC39YCR093W KEL3Q08979 651 aaPredicted RBP1.1□□□□□ -2.23
CDC39YCR093W FOL3Q12676 427 aaPredicted RBP1.1□□□□□ -2.23
CDC39YCR093W FIG2P25653 1609 aa1.1□□□□□ -2.23
CDC39YCR093W SAM2P19358 384 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W KGD1P20967 1014 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W AAT2P23542 418 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W KAR9P32526 644 aa1.1□□□□□ -2.23
CDC39YCR093W YPT53P36019 220 aa1.1□□□□□ -2.23
CDC39YCR093W LCB2P40970 561 aa1.1□□□□□ -2.23
CDC39YCR093W OST1P41543 476 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W RTN1Q04947 295 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W BSC1Q12140 328 aa1.1□□□□□ -2.23
CDC39YCR093W YGK3Q12222 375 aaPredicted RBP1.1□□□□□ -2.23
CDC39YCR093W PAB1P04147 577 aaKnown RBP RIP-Chip data1.1□□□□□ -2.23not detected
CDC39YCR093W YIM1P28625 365 aa1.1□□□□□ -2.23
CDC39YCR093W MCR1P36060 302 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W LSM5P40089 93 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W SYG1P40528 902 aa1.1□□□□□ -2.23
CDC39YCR093W YFL012WP43580 148 aa1.1□□□□□ -2.23
CDC39YCR093W SPT15P13393 240 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W GLC7P32598 312 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W SRB2P34162 210 aa1.1□□□□□ -2.23
CDC39YCR093W PRP39P39682 629 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W UTP25P40498 721 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W YNL320WP42840 284 aa1.1□□□□□ -2.23
CDC39YCR093W RSM27P53305 110 aa1.1□□□□□ -2.23
CDC39YCR093W YNR048WP53740 393 aa1.1□□□□□ -2.23
CDC39YCR093W SMP3Q04174 516 aa1.1□□□□□ -2.23
CDC39YCR093W HRI1Q05905 244 aaKnown RBP1.1□□□□□ -2.23
CDC39YCR093W LDS2Q08218 356 aa1.1□□□□□ -2.23
CDC39YCR093W NUP192P47054 1683 aa1.1□□□□□ -2.23
CDC39YCR093W PRP21P32524 280 aaPredicted RBP1.09□□□□□ -2.23
CDC39YCR093W YKL071WP36086 256 aa1.09□□□□□ -2.23
CDC39YCR093W RXT2P38255 430 aa1.09□□□□□ -2.23
CDC39YCR093W GEP4P38812 185 aa1.09□□□□□ -2.23
CDC39YCR093W CCT4P39078 528 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W PRM5P40476 318 aa1.09□□□□□ -2.23
CDC39YCR093W RPS10BP46784 105 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W ROG1P53118 685 aa1.09□□□□□ -2.23
CDC39YCR093W RPL15BP54780 204 aaPredicted RBP1.09□□□□□ -2.23
CDC39YCR093W SPR6Q01684 191 aa1.09□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 48.1 ms