RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CRYGNQ8WXF5 182 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 NECAB3Q96P71 396 aaPredicted RBP11.69□□□□□ -0.54
SCN1A-222ENST00000642141 RNF26Q9BY78 433 aaPredicted RBP11.69□□□□□ -0.54
SCN1A-222ENST00000642141 PPP4R2Q9NY27 417 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 SAMM50Q9Y512 469 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 ESYT2A0FGR8 921 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 CSPG5O95196 566 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 ATG7O95352 703 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 ATP4AP20648 1035 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 HTRA4P83105 476 aaPredicted RBP11.68□□□□□ -0.54
SCN1A-222ENST00000642141 TMEM266Q2M3C6 531 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 FBXO47Q5MNV8 452 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 FAM160B1Q5W0V3 765 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 MIS18BP1Q6P0N0 1132 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 MTHFD1LQ6UB35 978 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 RPAINQ86UA6 219 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 TRIM22Q8IYM9 498 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 IL27Q8NEV9 243 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 FBXO22Q8NEZ5 403 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 BICD2Q8TD16 824 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 ADAMTS19Q8TE59 1207 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 SYMPKQ92797 1274 aaKnown RBP11.68□□□□□ -0.54
SCN1A-222ENST00000642141 APBB2Q92870 758 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 CDHR5Q9HBB8 845 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 ZNF302Q9NR11 478 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 TCEAL9Q9UHQ7 104 aa11.68□□□□□ -0.54
SCN1A-222ENST00000642141 NID2Q14112 1375 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 PRRC2BQ5JSZ5 2229 aaKnown RBP11.67□□□□□ -0.54
SCN1A-222ENST00000642141 IGKV6D-21A0A0A0MT36 114 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 M0QZ92 97 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 CHMP2AO43633 222 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 EDIL3O43854 480 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 POU3F3P20264 500 aaPredicted RBP11.67□□□□□ -0.54
SCN1A-222ENST00000642141 EVCP57679 992 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 EPC2Q52LR7 807 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 IER5Q5VY09 327 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 RTN4RL1Q86UN2 441 aaPredicted RBP11.67□□□□□ -0.54
SCN1A-222ENST00000642141 TEX2Q8IWB9 1127 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 METTL13Q8N6R0 699 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 CCDC148Q8NFR7 591 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 ATP8B4Q8TF62 1192 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 IL17RAQ96F46 866 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 CELF4Q9BZC1 486 aaKnown RBP11.67□□□□□ -0.54
SCN1A-222ENST00000642141 GABBR1Q9UBS5 961 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 KCNJ14Q9UNX9 436 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 PCDHA2Q9Y5H9 948 aa11.67□□□□□ -0.54
SCN1A-222ENST00000642141 KAT6AQ92794 2004 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 ZBTB42B2RXF5 422 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 HBP1O60381 514 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 KRT76Q01546 638 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 NFX1Q12986 1120 aaKnown RBP11.66□□□□□ -0.54
SCN1A-222ENST00000642141 MCTP2Q6DN12 878 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 TSHZ1Q6ZSZ6 1077 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 TMEM192Q8IY95 271 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 KIAA0319LQ8IZA0 1049 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 TBCKQ8TEA7 893 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 LINC01599Q8WXQ3 324 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 TNPO1Q92973 898 aaKnown RBP11.66□□□□□ -0.54
SCN1A-222ENST00000642141 LENG9Q96B70 501 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 ZNF274Q96GC6 653 aaPredicted RBP11.66□□□□□ -0.54
SCN1A-222ENST00000642141 ZNF668Q96K58 619 aaPredicted RBP11.66□□□□□ -0.54
SCN1A-222ENST00000642141 TM6SF1Q9BZW5 370 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 GJB4Q9NTQ9 266 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 TBC1D22BQ9NU19 505 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 PADI3Q9ULW8 664 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 PCDHA4Q9UN74 947 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 TRPV2Q9Y5S1 764 aa11.66□□□□□ -0.54
SCN1A-222ENST00000642141 SMIM35A0A1B0GVV1 85 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 MSH4O15457 936 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 TDP2O95551 362 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 VTNP04004 478 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 PSAPP07602 524 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 BMP1P13497 986 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 GATMP50440 423 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 SLC26A2P50443 739 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 SETQ01105 290 aaPredicted RBP11.65□□□□□ -0.54
SCN1A-222ENST00000642141 SCRN1Q12765 414 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 PAK2Q13177 524 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 GPM6BQ13491 265 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 KIZQ2M2Z5 673 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 PAN2Q504Q3 1202 aaKnown RBP11.65□□□□□ -0.54
SCN1A-222ENST00000642141 ZNF746Q6NUN9 644 aaPredicted RBP11.65□□□□□ -0.54
SCN1A-222ENST00000642141 BLIDQ8IZY5 108 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 FIBCD1Q8N539 461 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 NECAB1Q8N987 351 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 SP7Q8TDD2 431 aaPredicted RBP11.65□□□□□ -0.54
SCN1A-222ENST00000642141 HLA-CQ95604 372 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 UHRF1Q96T88 793 aaPredicted RBP11.65□□□□□ -0.54
SCN1A-222ENST00000642141 TMX1Q9H3N1 280 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 SH3GLB2Q9NR46 395 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 TPCN1Q9ULQ1 816 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 PCDHA10Q9Y5I2 948 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 MICAL3Q7RTP6 2002 aa11.65□□□□□ -0.54
SCN1A-222ENST00000642141 TNFRSF10AO00220 468 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 GAS7O60861 476 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 DEXIO95424 95 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 CIITAP33076 1130 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 CTNNB1P35222 781 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 USP11P51784 963 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 CLCN3P51790 818 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms