RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 MFSD1Q9H3U5 465 aa18.86■□□□□ 0.61
CLN3-264ENST00000637985 AAASQ9NRG9 546 aa18.86■□□□□ 0.61
CLN3-264ENST00000637985 CDH22Q9UJ99 828 aa18.86■□□□□ 0.61
CLN3-264ENST00000637985 PCDHA1Q9Y5I3 950 aa18.86■□□□□ 0.61
CLN3-264ENST00000637985 CEP250Q9BV73 2442 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 NEDD4P46934 1319 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 STAM2O75886 525 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 GRIK4Q16099 956 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 CWF19L1Q69YN2 538 aaKnown RBP18.85■□□□□ 0.61
CLN3-264ENST00000637985 FCHSD1Q86WN1 690 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 NECTIN4Q96NY8 510 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 RNF41Q9H4P4 317 aaPredicted RBP18.85■□□□□ 0.61
CLN3-264ENST00000637985 POMKQ9H5K3 350 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 TMEM260Q9NX78 707 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 PADI3Q9ULW8 664 aa18.85■□□□□ 0.61
CLN3-264ENST00000637985 FNDC1Q4ZHG4 1894 aaPredicted RBP18.85■□□□□ 0.61
CLN3-264ENST00000637985 GCOM1H8Y6P7 765 aaPredicted RBP18.84■□□□□ 0.61
CLN3-264ENST00000637985 FIBPO43427 364 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 RPLP2P05387 115 aaKnown RBP18.84■□□□□ 0.61
CLN3-264ENST00000637985 POLR2MP0CAP2 368 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 PUM1Q14671 1186 aaKnown RBP eCLIP18.84■□□□□ 0.61
CLN3-264ENST00000637985 CCDC178Q5BJE1 867 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 LLGL2Q6P1M3 1020 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 CCDC105Q8IYK2 499 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 CNTNAP3BQ96NU0 1288 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 SENP7Q9BQF6 1050 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 CNTNAP3Q9BZ76 1288 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 ADAM7Q9H2U9 754 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 DIAPH3Q9NSV4 1193 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 LRFN2Q9ULH4 789 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 LZTS1Q9Y250 596 aa18.84■□□□□ 0.61
CLN3-264ENST00000637985 FRMPD4Q14CM0 1322 aa18.83■□□□□ 0.61
CLN3-264ENST00000637985 ZFHX4Q86UP3 3567 aa18.83■□□□□ 0.61
CLN3-264ENST00000637985 LOXHD1Q8IVV2 1947 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 ZBTB5O15062 677 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 PI15O43692 258 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 ASGR2P07307 311 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 AOC1P19801 751 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 NT5C2P49902 561 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 ANGPT1Q15389 498 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 SPOUT1Q5T280 376 aaKnown RBP18.83■□□□□ 0.6
CLN3-264ENST00000637985 IER5Q5VY09 327 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 PLPP4Q5VZY2 271 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 CWC27Q6UX04 472 aaKnown RBP18.83■□□□□ 0.6
CLN3-264ENST00000637985 IQCA1Q86XH1 822 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 THNSL1Q8IYQ7 743 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 TMX1Q9H3N1 280 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 SEMA4AQ9H3S1 761 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 RTEL1Q9NZ71 1219 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 ACACBO00763 2458 aa18.83■□□□□ 0.6
CLN3-264ENST00000637985 IGSF9BQ9UPX0 1349 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 LAMA4Q16363 1823 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 HIDE1A8MVS5 230 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 LMNAP02545 664 aaKnown RBP18.82■□□□□ 0.6
CLN3-264ENST00000637985 ARP10275 920 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 NPR3P17342 541 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 TCF7P36402 384 aaPredicted RBP18.82■□□□□ 0.6
CLN3-264ENST00000637985 SARSP49591 514 aaKnown RBP18.82■□□□□ 0.6
CLN3-264ENST00000637985 SP4Q02446 784 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 ITIH3Q06033 890 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 APOBRQ0VD83 1088 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 PAK2Q13177 524 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 CES5AQ6NT32 575 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 KIAA2013Q8IYS2 634 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 ZDHHC14Q8IZN3 488 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 STAG2Q8N3U4 1231 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 ENAHQ8N8S7 591 aaPredicted RBP18.82■□□□□ 0.6
CLN3-264ENST00000637985 COLGALT1Q8NBJ5 622 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 FLCNQ8NFG4 579 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 PCDHB7Q9Y5E2 793 aa18.82■□□□□ 0.6
CLN3-264ENST00000637985 TBKBP1A7MCY6 615 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 ZNF213O14771 459 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 PLCB3Q01970 1234 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 TPRNQ4KMQ1 711 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 DTWD2Q8NBA8 298 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 KCNG4Q8TDN1 519 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 MRPS27Q92552 414 aaKnown RBP18.81■□□□□ 0.6
CLN3-264ENST00000637985 CASP10Q92851 521 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 ZBTB10Q96DT7 871 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 ZSCAN10Q96SZ4 725 aaPredicted RBP18.81■□□□□ 0.6
CLN3-264ENST00000637985 TCF25Q9BQ70 676 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 FAM49AQ9H0Q0 323 aaPredicted RBP18.81■□□□□ 0.6
CLN3-264ENST00000637985 NGRNQ9NPE2 291 aaKnown RBP18.81■□□□□ 0.6
CLN3-264ENST00000637985 TYW1Q9NV66 732 aaKnown RBP18.81■□□□□ 0.6
CLN3-264ENST00000637985 DLL3Q9NYJ7 618 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 ERAP1Q9NZ08 941 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 HCSTQ9UBK5 93 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 LIMD1Q9UGP4 676 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 TRPV2Q9Y5S1 764 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 OTOGLQ3ZCN5 2332 aa18.81■□□□□ 0.6
CLN3-264ENST00000637985 CACNA1GO43497 2377 aa18.8■□□□□ 0.6
CLN3-264ENST00000637985 MARK3P27448 753 aa18.8■□□□□ 0.6
CLN3-264ENST00000637985 FAM102BQ5T8I3 360 aa18.8■□□□□ 0.6
CLN3-264ENST00000637985 DSCC1Q9BVC3 393 aa18.8■□□□□ 0.6
CLN3-264ENST00000637985 PUF60Q9UHX1 559 aaKnown RBP18.8■□□□□ 0.6
CLN3-264ENST00000637985 GSTTP1A0A1W2PQM5 241 aa18.79■□□□□ 0.6
CLN3-264ENST00000637985 KLRF2D3W0D1 207 aa18.79■□□□□ 0.6
CLN3-264ENST00000637985 MTHFRP42898 656 aa18.79■□□□□ 0.6
CLN3-264ENST00000637985 TMEM62Q0P6H9 643 aa18.79■□□□□ 0.6
CLN3-264ENST00000637985 FAM43BQ6ZT52 329 aaPredicted RBP18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms