RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZBTB10Q96DT7 871 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 GJB4Q9NTQ9 266 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 KIF28PB7ZC32 967 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 CA3P07451 260 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 PPP2R2DQ66LE6 453 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 PDXDC2PQ6P474 469 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 PRDM12Q9H4Q4 367 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 ZBTB42B2RXF5 422 aa21.77■■□□□ 1.08
CLN3-260ENST00000637578 GJB5O95377 273 aa21.77■■□□□ 1.08
CLN3-260ENST00000637578 PSAPP07602 524 aa21.77■■□□□ 1.08
CLN3-260ENST00000637578 MTHFD1LQ6UB35 978 aa21.77■■□□□ 1.08
CLN3-260ENST00000637578 NSUN7Q8NE18 718 aaKnown RBP21.77■■□□□ 1.08
CLN3-260ENST00000637578 MAFAQ8NHW3 353 aaPredicted RBP21.77■■□□□ 1.08
CLN3-260ENST00000637578 TRAPPC12Q8WVT3 735 aa21.77■■□□□ 1.08
CLN3-260ENST00000637578 PTPRSQ13332 1948 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 COL1A2P08123 1366 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 SMIM35A0A1B0GVV1 85 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 PSMD10O75832 226 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 TDP2O95551 362 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 ST3GAL1Q11201 340 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 B3GNT9Q6UX72 402 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.76■■□□□ 1.07
CLN3-260ENST00000637578 TMCO2Q7Z6W1 182 aaPredicted RBP21.76■■□□□ 1.07
CLN3-260ENST00000637578 SLC17A8Q8NDX2 589 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 OXER1Q8TDS5 423 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 APBB2Q92870 758 aa21.76■■□□□ 1.07
CLN3-260ENST00000637578 WDR64B1ANS9 1081 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 TLL1O43897 1013 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 ARHGEF15O94989 841 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 TAP1Q03518 808 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 INF2Q27J81 1249 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 ZNF484Q5JVG2 852 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 ETNPPLQ8TBG4 499 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 BBXQ8WY36 941 aaPredicted RBP21.75■■□□□ 1.07
CLN3-260ENST00000637578 RAD9AQ99638 391 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 IFIH1Q9BYX4 1025 aaKnown RBP21.75■■□□□ 1.07
CLN3-260ENST00000637578 DISC1Q9NRI5 854 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 TCEAL9Q9UHQ7 104 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 SQORQ9Y6N5 450 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 EYSQ5T1H1 3165 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 IGSF9BQ9UPX0 1349 aa21.75■■□□□ 1.07
CLN3-260ENST00000637578 ST18O60284 1047 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 GAS7O60861 476 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 KLRC1P26715 233 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 MRPS6P82932 125 aaKnown RBP21.74■■□□□ 1.07
CLN3-260ENST00000637578 ADGRE1Q14246 886 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 LPIN1Q14693 890 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 FBXO47Q5MNV8 452 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 LRCH2Q5VUJ6 765 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 PPP4R3AQ6IN85 833 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 NME8Q8N427 588 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 GJA10Q969M2 543 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 GAS2L1Q99501 681 aaPredicted RBP21.74■■□□□ 1.07
CLN3-260ENST00000637578 GABBR1Q9UBS5 961 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 LIMCH1Q9UPQ0 1083 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 CDY2AQ9Y6F7 541 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 CCDC194A0A1B0GVG4 234 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.74■■□□□ 1.07
CLN3-260ENST00000637578 CD2BP2O95400 341 aaKnown RBP21.74■■□□□ 1.07
CLN3-260ENST00000637578 AMHP03971 560 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 SFNP31947 248 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 IER5Q5VY09 327 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 TNFRSF25Q93038 417 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 TEKT3Q9BXF9 490 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 FAM49AQ9H0Q0 323 aaPredicted RBP21.74■■□□□ 1.07
CLN3-260ENST00000637578 UNC45AQ9H3U1 944 aa21.74■■□□□ 1.07
CLN3-260ENST00000637578 MYO9BQ13459 2157 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 KDM3AQ9Y4C1 1321 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 GHRP10912 638 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 JAK3P52333 1124 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 NEK8Q86SG6 692 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 IL27Q8NEV9 243 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 RDM1Q8NG50 284 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 TOP1MTQ969P6 601 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 ZBED2Q9BTP6 218 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 DDX25Q9UHL0 483 aaKnown RBP21.73■■□□□ 1.07
CLN3-260ENST00000637578 SAMM50Q9Y512 469 aa21.73■■□□□ 1.07
CLN3-260ENST00000637578 MICAL3Q7RTP6 2002 aa21.72■■□□□ 1.07
CLN3-260ENST00000637578 LCHNA4D1U4 455 aa21.72■■□□□ 1.07
CLN3-260ENST00000637578 ZNF862O60290 1169 aa21.72■■□□□ 1.07
CLN3-260ENST00000637578 JAK2O60674 1132 aa21.72■■□□□ 1.07
CLN3-260ENST00000637578 HTRA4P83105 476 aaPredicted RBP21.72■■□□□ 1.07
CLN3-260ENST00000637578 TSHZ1Q6ZSZ6 1077 aa21.72■■□□□ 1.07
CLN3-260ENST00000637578 KIAA0319LQ8IZA0 1049 aa21.72■■□□□ 1.07
CLN3-260ENST00000637578 SIP14410 1827 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 SLC37A4O43826 429 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 GCFC2P16383 781 aaKnown RBP21.71■■□□□ 1.07
CLN3-260ENST00000637578 LETM2Q2VYF4 491 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 EARS2Q5JPH6 523 aaKnown RBP21.71■■□□□ 1.07
CLN3-260ENST00000637578 PIK3AP1Q6ZUJ8 805 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 CKAP2LQ8IYA6 745 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 USP38Q8NB14 1042 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 FAM167AQ96KS9 214 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 CELF4Q9BZC1 486 aaKnown RBP21.71■■□□□ 1.07
CLN3-260ENST00000637578 AGO3Q9H9G7 860 aaKnown RBP21.71■■□□□ 1.07
CLN3-260ENST00000637578 KCNMB3Q9NPA1 279 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 INSL6Q9Y581 213 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 TRPV2Q9Y5S1 764 aa21.71■■□□□ 1.07
CLN3-260ENST00000637578 C22orf31O95567 290 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 POU3F3P20264 500 aaPredicted RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms