RNA–Protein interactions for RNA: ENST00000629427.2

SHPRH-211, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SHPRH, Length 7,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-211ENST00000629427 ZNF394Q53GI3 561 aa12.64□□□□□ -0.39
SHPRH-211ENST00000629427 DHX38Q92620 1227 aaKnown RBP12.64□□□□□ -0.39
SHPRH-211ENST00000629427 PBKQ96KB5 322 aa12.64□□□□□ -0.39
SHPRH-211ENST00000629427 NHEJ1Q9H9Q4 299 aaPredicted RBP12.64□□□□□ -0.39
SHPRH-211ENST00000629427 PRDM5Q9NQX1 630 aaPredicted RBP12.64□□□□□ -0.39
SHPRH-211ENST00000629427 TPX2Q9ULW0 747 aaKnown RBP12.64□□□□□ -0.39
SHPRH-211ENST00000629427 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.64□□□□□ -0.39
SHPRH-211ENST00000629427 EFCAB6Q5THR3 1501 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 EEF1B2P24534 225 aaKnown RBP12.63□□□□□ -0.39
SHPRH-211ENST00000629427 CCDC197Q8NCU1 140 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 SH3RF3Q8TEJ3 882 aaPredicted RBP12.63□□□□□ -0.39
SHPRH-211ENST00000629427 PYROXD1Q8WU10 500 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 EFHD1Q9BUP0 239 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 FSD1LQ9BXM9 530 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 UGGT1Q9NYU2 1555 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 ETF1P62495 437 aaKnown RBP12.63□□□□□ -0.39
SHPRH-211ENST00000629427 PSMD2Q13200 908 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 SLMAPQ14BN4 828 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 NKX1-1Q15270 411 aaPredicted RBP12.63□□□□□ -0.39
SHPRH-211ENST00000629427 PDCD7Q8N8D1 485 aaKnown RBP12.63□□□□□ -0.39
SHPRH-211ENST00000629427 FAF2Q96CS3 445 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 MED4Q9NPJ6 270 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 SUGT1Q9Y2Z0 365 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 CLDN3O15551 220 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 SLCO1A2P46721 670 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 SPATS2Q86XZ4 545 aaKnown RBP12.63□□□□□ -0.39
SHPRH-211ENST00000629427 GPR108Q9NPR9 543 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 DONSONQ9NYP3 566 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 RWDD2AQ9UIY3 292 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 DPYSL4O14531 572 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 ESRRBO95718 433 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 CYP21A2P08686 494 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 CACNB3P54284 484 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 TEX2Q8IWB9 1127 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 BANK1Q8NDB2 785 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 ZHX2Q9Y6X8 837 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 SHROOM2Q13796 1616 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 EXOC1LA0A1B0GW35 172 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 RMDN3Q96TC7 470 aa12.63□□□□□ -0.39
SHPRH-211ENST00000629427 RRAGDQ9NQL2 400 aaPredicted RBP12.63□□□□□ -0.39
SHPRH-211ENST00000629427 CRKP46108 304 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 STXBP2Q15833 593 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 FAM83BQ5T0W9 1011 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 TMEM179Q6ZVK1 233 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 PCDHA13Q9Y5I0 950 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 TMEM247A6NEH6 219 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 SH2B2O14492 632 aaPredicted RBP12.62□□□□□ -0.39
SHPRH-211ENST00000629427 LDHAP00338 332 aaKnown RBP12.62□□□□□ -0.39
SHPRH-211ENST00000629427 ARHGDIAP52565 204 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 IFT88Q13099 833 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 PPP6R3Q5H9R7 873 aaPredicted RBP12.62□□□□□ -0.39
SHPRH-211ENST00000629427 PI16Q6UXB8 463 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 SEPT12Q8IYM1 358 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 MAML1Q92585 1016 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 WRNIP1Q96S55 665 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 POLR3EQ9NVU0 708 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 HOXC10Q9NYD6 342 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.62□□□□□ -0.393e-7■■■□□ 18.4
SHPRH-211ENST00000629427 KCNA4P22459 653 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 ALCAMQ13740 583 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 DPCR1Q3MIW9 517 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 PASD1Q8IV76 773 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 THNSL1Q8IYQ7 743 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 ERVV-1B6SEH8 477 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 TSPY1Q01534 308 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 DRC3Q9H069 523 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 RAVER2Q9HCJ3 691 aaKnown RBP12.62□□□□□ -0.39
SHPRH-211ENST00000629427 MAP3K7O43318 606 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 TJP3O95049 919 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 SLC7A5P2Q9GIP4 190 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 SFMBT1Q9UHJ3 866 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 FAF1Q9UNN5 650 aaPredicted RBP12.62□□□□□ -0.39
SHPRH-211ENST00000629427 MYL1P05976 194 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 GNL1P36915 607 aaPredicted RBP12.62□□□□□ -0.39
SHPRH-211ENST00000629427 CCT5P48643 541 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 LIG3P49916 1009 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 SLC7A5Q01650 507 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 ATG16L1Q676U5 607 aa12.62□□□□□ -0.39
SHPRH-211ENST00000629427 TRMT10CQ7L0Y3 403 aaKnown RBP12.62□□□□□ -0.39
SHPRH-211ENST00000629427 H3BRJ5 948 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 DNAJC8O75937 253 aaPredicted RBP12.61□□□□□ -0.39
SHPRH-211ENST00000629427 RASIP1Q5U651 963 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 FOXP4Q8IVH2 680 aaPredicted RBP12.61□□□□□ -0.39
SHPRH-211ENST00000629427 TRIM59Q8IWR1 403 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 NSUN7Q8NE18 718 aaKnown RBP12.61□□□□□ -0.39
SHPRH-211ENST00000629427 RBM46Q8TBY0 533 aaKnown RBP12.61□□□□□ -0.39
SHPRH-211ENST00000629427 AP1M1Q9BXS5 423 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 NRBP1Q9UHY1 535 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 SNCBQ16143 134 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 MAPK6Q16659 721 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 ACCSLQ4AC99 568 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 GLE1Q53GS7 698 aaKnown RBP12.61□□□□□ -0.39
SHPRH-211ENST00000629427 ZNF667Q5HYK9 610 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 PCDHA6Q9UN73 950 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 PCDHA8Q9Y5H6 950 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 ZBBXA8MT70 800 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 CFLARO15519 480 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 NNMTP40261 264 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 APBA1Q02410 837 aa12.61□□□□□ -0.39
SHPRH-211ENST00000629427 ZNF568Q3ZCX4 644 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms