RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 HMGB1P1B2RPK0 211 aaPredicted RBP17.22■□□□□ 0.35
NPHP4-211ENST00000622020 HSPA9P38646 679 aaKnown RBP17.22■□□□□ 0.35
NPHP4-211ENST00000622020 RHBDL3P58872 404 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 CCDC13Q8IYE1 715 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 ARHGEF1Q92888 912 aaKnown RBP17.22■□□□□ 0.35
NPHP4-211ENST00000622020 CCDC114Q96M63 670 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 LRRC27Q9C0I9 530 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 AIPL1Q9NZN9 384 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 PCDHA2Q9Y5H9 948 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 LAMB1P07942 1786 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 AKAP3O75969 853 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 FAM107AO95990 144 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 PON1P27169 355 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 USP11P51784 963 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 IFFO1Q0D2I5 559 aa17.22■□□□□ 0.35
NPHP4-211ENST00000622020 PRPF38AQ8NAV1 312 aaKnown RBP17.22■□□□□ 0.35
NPHP4-211ENST00000622020 C6orf229H3BNL8 230 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 PGRMC1O00264 195 aaKnown RBP17.21■□□□□ 0.35
NPHP4-211ENST00000622020 XRCC5P13010 732 aaKnown RBP17.21■□□□□ 0.35
NPHP4-211ENST00000622020 CNPY4Q8N129 248 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 DDX20Q9UHI6 824 aaKnown RBP17.21■□□□□ 0.35
NPHP4-211ENST00000622020 IRS2Q9Y4H2 1338 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 FGGP02679 453 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 SCNN1DP51172 638 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 GTF2IP78347 998 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 MICALCLQ6ZW33 695 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 TPCN2Q8NHX9 752 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 SYN2Q92777 582 aaPredicted RBP17.21■□□□□ 0.35
NPHP4-211ENST00000622020 CEP63Q96MT8 703 aa17.21■□□□□ 0.35
NPHP4-211ENST00000622020 GPR75-ASB3A0A0A6YYF3 556 aa17.21■□□□□ 0.34
NPHP4-211ENST00000622020 PNMA6FA0A0J9YX94 578 aa17.21■□□□□ 0.34
NPHP4-211ENST00000622020 ESYT2A0FGR8 921 aa17.21■□□□□ 0.34
NPHP4-211ENST00000622020 MRPL12P52815 198 aaKnown RBP17.21■□□□□ 0.34
NPHP4-211ENST00000622020 USH1GQ495M9 461 aa17.21■□□□□ 0.34
NPHP4-211ENST00000622020 AADACL2Q6P093 401 aa17.21■□□□□ 0.34
NPHP4-211ENST00000622020 CCDC121Q6ZUS5 278 aa17.21■□□□□ 0.34
NPHP4-211ENST00000622020 GLYCTKQ8IVS8 523 aa17.21■□□□□ 0.34
NPHP4-211ENST00000622020 GMNCA6NCL1 334 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 SETQ01105 290 aaPredicted RBP17.2■□□□□ 0.34
NPHP4-211ENST00000622020 CATSPER3Q86XQ3 398 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 CEP57Q86XR8 500 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 MREGQ8N565 214 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 SCFD2Q8WU76 684 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 GLG1Q92896 1179 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 REEP2Q9BRK0 252 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 GCNT4Q9P109 453 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 ROBO1Q9Y6N7 1651 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 H0YGN5 161 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 GCNT3O95395 438 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 AFPP02771 609 aaKnown RBP17.2■□□□□ 0.34
NPHP4-211ENST00000622020 RDH13Q8NBN7 331 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.2■□□□□ 0.342e-8■■■□□ 18.2
NPHP4-211ENST00000622020 PLCB1Q9NQ66 1216 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 DDX4Q9NQI0 724 aaKnown RBP17.2■□□□□ 0.34
NPHP4-211ENST00000622020 TMEM59LQ9UK28 342 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 NFS1Q9Y697 457 aa17.2■□□□□ 0.34
NPHP4-211ENST00000622020 GRAPQ13588 217 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 PPP4R3AQ6IN85 833 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 CPLX4Q7Z7G2 160 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 LRRC57Q8N9N7 239 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 GRAPLQ8TC17 118 aaPredicted RBP17.19■□□□□ 0.34
NPHP4-211ENST00000622020 NT5C3AQ9H0P0 336 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 PCDHA1Q9Y5I3 950 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 GNA14O95837 355 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 H2AFZP0C0S5 128 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 POLD1P28340 1107 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 HOXD13P35453 343 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 CACNB3P54284 484 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 ZNF543Q08ER8 600 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 H2AFVQ71UI9 128 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 CD302Q8IX05 232 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 RAPGEF5Q92565 580 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 LRRC45Q96CN5 670 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 DHX36Q9H2U1 1008 aaKnown RBP17.19■□□□□ 0.34
NPHP4-211ENST00000622020 CCDC88AQ3V6T2 1871 aa17.19■□□□□ 0.34
NPHP4-211ENST00000622020 DNM1LO00429 736 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 ASPRV1Q53RT3 343 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 CYP2W1Q8TAV3 490 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 PIGOQ8TEQ8 1089 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 SCLT1Q96NL6 688 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 OSBPL7Q9BZF2 842 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 BHMT2Q9H2M3 363 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 HAUS2Q9NVX0 235 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 LEMD3Q9Y2U8 911 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 COL22A1Q8NFW1 1626 aaPredicted RBP17.18■□□□□ 0.34
NPHP4-211ENST00000622020 A6NNZ2 444 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 DDX3XO00571 662 aaKnown RBP eCLIP17.18■□□□□ 0.344e-6■■■■■ 29.2
NPHP4-211ENST00000622020 ZBTB39O15060 712 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 FLOT1O75955 427 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 GALCP54803 685 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 PLS1Q14651 629 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 TUBB8Q3ZCM7 444 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 UBAP2Q5T6F2 1119 aaKnown RBP17.18■□□□□ 0.34
NPHP4-211ENST00000622020 SAMD1Q6SPF0 538 aaPredicted RBP17.18■□□□□ 0.34
NPHP4-211ENST00000622020 RPGRQ92834 1020 aaKnown RBP17.18■□□□□ 0.34
NPHP4-211ENST00000622020 CEP89Q96ST8 783 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 KLC4Q9NSK0 619 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 RGL1Q9NZL6 768 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 TMOD4Q9NZQ9 345 aa17.18■□□□□ 0.34
NPHP4-211ENST00000622020 PNMA2Q9UL42 364 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms