RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 FLT1P17948 1338 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 STXBP3O00186 592 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SLC37A4O43826 429 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SERPING1P05155 500 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 CDK17Q00537 523 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 GRB10Q13322 594 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 ADAM9Q13443 819 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 LRRC14Q15048 493 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 NAB2Q15742 525 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 ASIC2Q16515 512 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 TXNRD3Q86VQ6 643 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 CLEC10AQ8IUN9 316 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 METTL13Q8N6R0 699 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 TTLL6Q8N841 843 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 GPR101Q96P66 508 aaPredicted RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 INPP4AQ96PE3 977 aaPredicted RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 TMEM47Q9BQJ4 181 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 MTA3Q9BTC8 594 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 BRIP1Q9BX63 1249 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 DBNDD1Q9H9R9 158 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 GPCPD1Q9NPB8 672 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 ATP6V0A2Q9Y487 856 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 COL4A3BPQ9Y5P4 624 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 BCL9O00512 1426 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SIPA1L3O60292 1781 aaPredicted RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 E9PMD0 336 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 CAND2O75155 1236 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 NOL4O94818 638 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 BTDP43251 543 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SLC18A3Q16572 532 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 UBE2SQ16763 222 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 ANKRD20A8PQ5CZ79 823 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 MEI1Q5TIA1 1274 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 INTS5Q6P9B9 1019 aaKnown RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 OTUD6AQ7L8S5 288 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 RNF10Q8N5U6 811 aaKnown RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 LRRC45Q96CN5 670 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SGSM3Q96HU1 749 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 BARHL2Q9NY43 387 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 TRAPPC3O43617 180 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 FGGP02679 453 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SHBGP04278 402 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 MYBL1P10243 752 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 FKBP3Q00688 224 aaKnown RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 ITIH3Q06033 890 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 FIGNQ5HY92 759 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 ALKBH5Q6P6C2 394 aaKnown RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 RUFY4Q6ZNE9 571 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SPATS2Q86XZ4 545 aaKnown RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 STAMBPL1Q96FJ0 436 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 LRRC27Q9C0I9 530 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 EHMT1Q9H9B1 1298 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 KCNK9Q9NPC2 374 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 PKD2L1Q9P0L9 805 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 ZBTB21Q9ULJ3 1066 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SNX24Q9Y343 169 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 NOC2LQ9Y3T9 749 aaKnown RBP7.57□□□□□ -1.2
NEDD9-216ENST00000620854 ECM29Q5VYK3 1845 aa7.57□□□□□ -1.2
NEDD9-216ENST00000620854 SLIT3O75094 1523 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 SPDYE3A6NKU9 549 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 FOXO6A8MYZ6 492 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 KIF4AO95239 1232 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 ZBTB7AO95365 584 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 GNA11P29992 359 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 HNRNPH3P31942 346 aaKnown RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 PLCB3Q01970 1234 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 ECM1Q16610 540 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 ASTE1Q2TB18 679 aaPredicted RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 CCDC174Q6PII3 467 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 REXO1Q8N1G1 1221 aaKnown RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 KIF2BQ8N4N8 673 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 ERMNQ8TAM6 284 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 U2AF1L4Q8WU68 220 aaKnown RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 MIEF2Q96C03 454 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 MTFR1LQ9H019 292 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 ATP8A2Q9NTI2 1148 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 PANK4Q9NVE7 773 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 SPEF2Q9C093 1822 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 NID2Q14112 1375 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 KCNH2Q12809 1159 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 SF3B3Q15393 1217 aaKnown RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 FAM26FQ5R3K3 315 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 PPP4R3AQ6IN85 833 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 LRRC55Q6ZSA7 311 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 UNC13DQ70J99 1090 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 ZNF571Q7Z3V5 609 aaPredicted RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 ISCUQ9H1K1 167 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 TSKSQ9UJT2 592 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 KIAA1024Q9UPX6 916 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.56□□□□□ -1.24e-7■■■■■ 41
NEDD9-216ENST00000620854 MEIS1O00470 390 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 CLIC2O15247 247 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 NTSR2O95665 410 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 MYL1P05976 194 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 HSPA9P38646 679 aaKnown RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 IFI35P80217 286 aaPredicted RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 DDR1Q08345 913 aa7.56□□□□□ -1.2
NEDD9-216ENST00000620854 PREPLQ4J6C6 727 aaPredicted RBP7.56□□□□□ -1.2
NEDD9-216ENST00000620854 PRR5LQ6MZQ0 368 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms