RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ARHGAP42A6NI28 874 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 ASB14A6NK59 587 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 SOX5P35711 763 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 SWSAP1Q6NVH7 229 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 USP17L6PQ6QN14 398 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 ERICH1Q86X53 443 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 PAGE5Q96GU1 130 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 ZWILCHQ9H900 591 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 HOMER3Q9NSC5 361 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 ZNRF3Q9ULT6 936 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 F8W8V4 182 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 IGKV5-2P06315 115 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 BASP1P80723 227 aaKnown RBP12.28□□□□□ -0.44
CLIP1-219ENST00000620786 RSRC1Q96IZ7 334 aaKnown RBP12.28□□□□□ -0.44
CLIP1-219ENST00000620786 AIFM3Q96NN9 605 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 TXNDC9O14530 226 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 RECQLP46063 649 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-219ENST00000620786 ARHGAP4P98171 946 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 PPP1R18Q6NYC8 613 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 CNOT7Q9UIV1 285 aaKnown RBP12.28□□□□□ -0.44
CLIP1-219ENST00000620786 ALKQ9UM73 1620 aa12.28□□□□□ -0.44
CLIP1-219ENST00000620786 PCK1P35558 622 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 HMGCS2P54868 508 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 MMEL1Q495T6 779 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 STAT3P40763 770 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 TAF1CQ15572 869 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-219ENST00000620786 PADI6Q6TGC4 694 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 SMIM5Q71RC9 77 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 AFG1LQ8WV93 481 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 PKNOX2Q96KN3 472 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 GCOM2Q9BZD3 368 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-219ENST00000620786 DCP1AQ9NPI6 582 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-219ENST00000620786 BAG5Q9UL15 447 aa12.27□□□□□ -0.44
CLIP1-219ENST00000620786 LRRD1A4D1F6 860 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 KBTBD13C9JR72 458 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 MTMR2Q13614 643 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 SLFNL1Q499Z3 407 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 OR6J1Q8NGC5 347 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 GABBR1Q9UBS5 961 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 PPME1Q9Y570 386 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 ZNF699Q32M78 642 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 PPP4R3CPQ6ZMV5 832 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 LINC00301Q8NCQ3 95 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 PSPC1Q8WXF1 523 aaKnown RBP12.27□□□□□ -0.45
CLIP1-219ENST00000620786 CFAP36Q96G28 342 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 FAM8A1Q9UBU6 413 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 SFNP31947 248 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 CCDC170Q8IYT3 715 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 ADGRF4Q8IZF3 695 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 PRPF38AQ8NAV1 312 aaKnown RBP12.27□□□□□ -0.45
CLIP1-219ENST00000620786 ZNF668Q96K58 619 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-219ENST00000620786 TMEM260Q9NX78 707 aa12.27□□□□□ -0.45
CLIP1-219ENST00000620786 PSMA2P25787 234 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 SLC12A1Q13621 1099 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 PFKFB3Q16875 520 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-219ENST00000620786 ARL6IP4Q66PJ3 421 aaKnown RBP12.26□□□□□ -0.45
CLIP1-219ENST00000620786 C2orf40Q9H1Z8 148 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 TULP4Q9NRJ4 1543 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 GLI2P10070 1586 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 SLC16A4O15374 487 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 CCNE1P24864 410 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 HOXA7P31268 230 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-219ENST00000620786 LRRC8AQ8IWT6 810 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 TTC30BQ8N4P2 665 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 FAM71BQ8TC56 605 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 ALKBH8Q96BT7 664 aaKnown RBP12.26□□□□□ -0.45
CLIP1-219ENST00000620786 POLR3FQ9H1D9 316 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-219ENST00000620786 ERCC6L2Q5T890 1561 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 GPC4O75487 556 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 ECEL1O95672 775 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 GUCY2DQ02846 1103 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 ASPHQ12797 758 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 ZNF394Q53GI3 561 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 TEX2Q8IWB9 1127 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 KLHL14Q9P2G3 628 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 POTEMA6NI47 508 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 GOLGA8KD6RF30 607 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 GRM4Q14833 912 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 PTPN21Q16825 1174 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 CYB5R4Q7L1T6 521 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 ZFYVE28Q9HCC9 887 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 HERC5Q9UII4 1024 aaKnown RBP12.26□□□□□ -0.45
CLIP1-219ENST00000620786 ADGRB3O60242 1522 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 F5H6K3 240 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 SERPING1P05155 500 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 OAS2P29728 719 aaKnown RBP12.26□□□□□ -0.45
CLIP1-219ENST00000620786 KLRC3Q07444 240 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 LLGL1Q15334 1064 aa12.26□□□□□ -0.45
CLIP1-219ENST00000620786 EFCAB8A8MWE9 144 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 PMLP29590 882 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 INPP5BP32019 993 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 RASSF2P50749 326 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 DPCR1Q3MIW9 517 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 GPT2Q8TD30 523 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 MRFAP1L1Q96HT8 127 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 FAM213AQ9BRX8 229 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 OLA1Q9NTK5 396 aaKnown RBP12.25□□□□□ -0.45
CLIP1-219ENST00000620786 PPARGP37231 505 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-219ENST00000620786 LRRC8CQ8TDW0 803 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 TTC25Q96NG3 672 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms