RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 TRIM49P0CI25 452 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 TRIM49CP0CI26 452 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 ATP2B4P23634 1241 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 ARHGAP4P98171 946 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 HDLBPQ00341 1268 aaKnown RBP15.37■□□□□ 0.05
COL6A1-207ENST00000612273 ZYXQ15942 572 aaKnown RBP15.37■□□□□ 0.05
COL6A1-207ENST00000612273 SLFN13Q68D06 897 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 PROM2Q8N271 834 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 ELMO3Q96BJ8 720 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 TRIM51Q9BSJ1 452 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 LRRC4CQ9HCJ2 640 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 NAGPAQ9UK23 515 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 PHLPP1O60346 1717 aa15.37■□□□□ 0.05
COL6A1-207ENST00000612273 PON1P27169 355 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 MNAT1P51948 309 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 ALS2CLQ60I27 953 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 PPP4R3AQ6IN85 833 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 SLF2Q8IX21 1173 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 IQCKQ8N0W5 287 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 RUSC1Q9BVN2 902 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 DCDC2CA8MYV0 355 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 FAM86B1E9PN63 330 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 DDX39AO00148 427 aaKnown RBP15.36■□□□□ 0.05
COL6A1-207ENST00000612273 TBCAO75347 108 aaKnown RBP15.36■□□□□ 0.05
COL6A1-207ENST00000612273 KIF4AO95239 1232 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 AFPP02771 609 aaKnown RBP15.36■□□□□ 0.05
COL6A1-207ENST00000612273 FAM86B2P0C5J1 330 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 CHADLQ6NUI6 762 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 EFCAB13Q8IY85 973 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 PIK3R5Q8WYR1 880 aa15.36■□□□□ 0.05
COL6A1-207ENST00000612273 SPDYE3A6NKU9 549 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 CDC42EP5Q6NZY7 148 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 AADACL2Q6P093 401 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 MYCT1Q8N699 235 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 SH3GL2Q99962 352 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 GANQ9H2C0 597 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 NOC2LQ9Y3T9 749 aaKnown RBP15.35■□□□□ 0.05
COL6A1-207ENST00000612273 A0A087WUV0 522 aaPredicted RBP15.35■□□□□ 0.05
COL6A1-207ENST00000612273 SHOX2O60902 331 aaPredicted RBP15.35■□□□□ 0.05
COL6A1-207ENST00000612273 CFBP00751 764 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 HLA-DOAP06340 250 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 GIT2Q14161 759 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 KNOP1Q1ED39 458 aaKnown RBP15.35■□□□□ 0.05
COL6A1-207ENST00000612273 IRF2BP2Q7Z5L9 587 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 GDF3Q9NR23 364 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 FBXL5Q9UKA1 691 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 HSD17B3P37058 310 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 BARGINQ6ZT62 677 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 RBM17Q96I25 401 aaKnown RBP15.35■□□□□ 0.05
COL6A1-207ENST00000612273 NOVA2Q9UNW9 492 aaKnown RBP15.35■□□□□ 0.05
COL6A1-207ENST00000612273 ATP8A1Q9Y2Q0 1164 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 PCDHA2Q9Y5H9 948 aa15.35■□□□□ 0.05
COL6A1-207ENST00000612273 NR3C1P04150 777 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 HOXD13P35453 343 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 SLC20A2Q08357 652 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 IQCDQ96DY2 449 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 TSKSQ9UJT2 592 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 DDTLA6NHG4 134 aaPredicted RBP15.34■□□□□ 0.05
COL6A1-207ENST00000612273 UBAP1LF5GYI3 381 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 FGGP02679 453 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 MDM1Q8TC05 714 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 GLG1Q92896 1179 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 CEP63Q96MT8 703 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 TMOD4Q9NZQ9 345 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 SCN7AQ01118 1682 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 EML1O00423 815 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 H2AFZP0C0S5 128 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 IL1R1P14778 569 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 GABPAQ06546 454 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 IFFO1Q0D2I5 559 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 ZNF746Q6NUN9 644 aaPredicted RBP15.34■□□□□ 0.05
COL6A1-207ENST00000612273 H2AFVQ71UI9 128 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 CAVIN3Q969G5 261 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 TAF1DQ9H5J8 278 aaPredicted RBP15.34■□□□□ 0.05
COL6A1-207ENST00000612273 ZBTB21Q9ULJ3 1066 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 PCDHGC5Q9Y5F6 944 aa15.34■□□□□ 0.05
COL6A1-207ENST00000612273 KDM3AQ9Y4C1 1321 aa15.33■□□□□ 0.05
COL6A1-207ENST00000612273 KIAA1551Q9HCM1 1747 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 GCOM1H8Y6P7 765 aaPredicted RBP15.33■□□□□ 0.04
COL6A1-207ENST00000612273 MYZAPP0CAP1 466 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 SLC12A3P55017 1021 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 DHX9Q08211 1270 aaKnown RBP15.33■□□□□ 0.04
COL6A1-207ENST00000612273 NBPF9Q3BBW0 867 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 KRT71Q3SY84 523 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 GPATCH11Q8N954 259 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 ZNF622Q969S3 477 aaKnown RBP eCLIP15.33■□□□□ 0.04
COL6A1-207ENST00000612273 ATP6V1G3Q96LB4 118 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 PCIF1Q9H4Z3 704 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 KRT13P13646 458 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 GALCP54803 685 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 SEMA3FQ13275 785 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 CERKLQ49MI3 558 aaPredicted RBP15.33■□□□□ 0.04
COL6A1-207ENST00000612273 COBLL1Q53SF7 1204 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 RC3H1Q5TC82 1133 aaKnown RBP15.33■□□□□ 0.04
COL6A1-207ENST00000612273 ICE2Q659A1 982 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 CCT8L2Q96SF2 557 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 CCDC113Q9H0I3 377 aa15.33■□□□□ 0.04
COL6A1-207ENST00000612273 NUCKS1Q9H1E3 243 aaKnown RBP15.33■□□□□ 0.04
COL6A1-207ENST00000612273 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.33■□□□□ 0.04
COL6A1-207ENST00000612273 DDX3XO00571 662 aaKnown RBP eCLIP15.32■□□□□ 0.043e-6■■■■■ 41.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms