RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MTMR1Q13613 665 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 HIC1Q14526 733 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 BMS1Q14692 1282 aaKnown RBP7.21□□□□□ -1.26
CUX1-220ENST00000607092 LPIN1Q14693 890 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 CBX2Q14781 532 aaPredicted RBP7.21□□□□□ -1.26
CUX1-220ENST00000607092 CASC1Q6TDU7 716 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 HFE2Q6ZVN8 426 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 PLPPR4Q7Z2D5 763 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 PLEKHM2Q8IWE5 1019 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 SMRP1Q8NCR6 262 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 PBXIP1Q96AQ6 731 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 SDF4Q9BRK5 362 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 PHF7Q9BWX1 381 aaPredicted RBP7.21□□□□□ -1.26
CUX1-220ENST00000607092 PSTPIP2Q9H939 334 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 C1orf112Q9NSG2 853 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 TRPV2Q9Y5S1 764 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 CDY2AQ9Y6F7 541 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 KDM3AQ9Y4C1 1321 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 KAT6AQ92794 2004 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 SMIM35A0A1B0GVV1 85 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 TMEM221A6NGB7 291 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 LOC730098B7Z3J9 87 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 hCG_1984214I3L0E3 225 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 M0R296 226 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 GPR182O15218 404 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 FOSP01100 380 aaPredicted RBP7.2□□□□□ -1.26
CUX1-220ENST00000607092 KCNA2P16389 499 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 HOXB8P17481 243 aaPredicted RBP7.2□□□□□ -1.26
CUX1-220ENST00000607092 PPM1AP35813 382 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 SP4Q02446 784 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 SIGLEC14Q08ET2 396 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 SPOUT1Q5T280 376 aaKnown RBP7.2□□□□□ -1.26
CUX1-220ENST00000607092 MCTP2Q6DN12 878 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 B4GALNT3Q6L9W6 998 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 TRIM50Q86XT4 487 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 FBXL6Q8N531 539 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 ZNF713Q8N859 430 aaPredicted RBP7.2□□□□□ -1.26
CUX1-220ENST00000607092 SPPL3Q8TCT6 385 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 MICAL1Q8TDZ2 1067 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 POF1BQ8WVV4 589 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 DNAJB3Q8WWF6 145 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 TMEM87BQ96K49 555 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 MSLNLQ96KJ4 702 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 NEK1Q96PY6 1258 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 IGFLR1Q9H665 355 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 TLE6Q9H808 572 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 JPH1Q9HDC5 661 aaPredicted RBP7.2□□□□□ -1.26
CUX1-220ENST00000607092 ALG13Q9NP73 1137 aaKnown RBP7.2□□□□□ -1.26
CUX1-220ENST00000607092 TLR9Q9NR96 1032 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 RTEL1Q9NZ71 1219 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 TCEAL9Q9UHQ7 104 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 MUTYHQ9UIF7 546 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 TRPC6Q9Y210 931 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 LZTS1Q9Y250 596 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 PCDHA2Q9Y5H9 948 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 NFASCO94856 1347 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 IGSF9BQ9UPX0 1349 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 TTC3P53804 2025 aa7.2□□□□□ -1.26
CUX1-220ENST00000607092 TECTAO75443 2155 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 DENND3A2RUS2 1198 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 CCDC69A6NI79 296 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 MEIS2O14770 477 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 CYTH3O43739 400 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 TBX10O75333 385 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 CYP21A2P08686 494 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 INSRRP14616 1297 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 CD52P31358 61 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 MCM5P33992 734 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 SARSP49591 514 aaKnown RBP7.19□□□□□ -1.26
CUX1-220ENST00000607092 ZXDAP98168 799 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 KRT76Q01546 638 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 KRT17Q04695 432 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 SEMA3FQ13275 785 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 CLUL1Q15846 466 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 E2F4Q16254 413 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 FAM160B1Q5W0V3 765 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 PPP1R18Q6NYC8 613 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 USP17L6PQ6QN14 398 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 SYNE3Q6ZMZ3 975 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 SLC24A5Q71RS6 500 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 CYB5R4Q7L1T6 521 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 ZBTB33Q86T24 672 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 GPKOWQ92917 476 aaPredicted RBP eCLIP7.19□□□□□ -1.26
CUX1-220ENST00000607092 NECTIN4Q96NY8 510 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 CELF4Q9BZC1 486 aaKnown RBP7.19□□□□□ -1.26
CUX1-220ENST00000607092 NGRNQ9NPE2 291 aaKnown RBP7.19□□□□□ -1.26
CUX1-220ENST00000607092 JADE2Q9NQC1 790 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 SLC9A2Q9UBY0 812 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 STK39Q9UEW8 545 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 PADI3Q9ULW8 664 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 NR2E1Q9Y466 385 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 PCDHB7Q9Y5E2 793 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 UBIAD1Q9Y5Z9 338 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 MRPL42Q9Y6G3 142 aaKnown RBP7.19□□□□□ -1.26
CUX1-220ENST00000607092 NLRC5Q86WI3 1866 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 EP300Q09472 2414 aaPredicted RBP7.19□□□□□ -1.26
CUX1-220ENST00000607092 COL1A2P08123 1366 aa7.19□□□□□ -1.26
CUX1-220ENST00000607092 EPG5Q9HCE0 2579 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 GSTTP1A0A1W2PQM5 241 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 E7EWF7 191 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms