RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ZBTB39O15060 712 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 STX6O43752 255 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 HBP1O60381 514 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 SLITRK3O94933 977 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 OR52Z1P0C646 297 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 CKBP12277 381 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 SLC26A2P50443 739 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 PRKCEQ02156 737 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 PKP1Q13835 747 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 ZNF618Q5T7W0 954 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 ZNF579Q8NAF0 562 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 CEP89Q96ST8 783 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 SH2D3AQ9BRG2 576 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 FTOQ9C0B1 505 aaKnown RBP eCLIP15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 TCEAL9Q9UHQ7 104 aa15.99■□□□□ 0.15
SHKBP1-217ENST00000598558 POTEMA6NI47 508 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 IQCF3P0C7M6 154 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 ACRP10323 421 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 BMP8BP34820 402 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 TECP42680 631 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 RBL2Q08999 1139 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 ORC2Q13416 577 aaPredicted RBP15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 CTTNQ14247 550 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 MBTPS1Q14703 1052 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 TCTN1Q2MV58 587 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 RILPL1Q5EBL4 403 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 C9orf50Q5SZB4 431 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 CKAP2LQ8IYA6 745 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 HSD17B14Q9BPX1 270 aa15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 LBHD1Q9BQE6 289 aaPredicted RBP15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 EIF2AK1Q9BQI3 630 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-217ENST00000598558 RRN3P2A6NIE6 340 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 OATP04181 439 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 P4HBP07237 508 aaKnown RBP15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 SPATA31C1P0DKV0 1188 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 GNAT1P11488 350 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 KLRC1P26715 233 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 CYP4A11Q02928 519 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 TARBP2Q15633 366 aaKnown RBP15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 FOXD4L5Q5VV16 416 aaPredicted RBP15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 MTHFD1LQ6UB35 978 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 ANO5Q75V66 913 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 BRAPQ7Z569 592 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 FOXD4L4Q8WXT5 416 aaPredicted RBP15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 BBXQ8WY36 941 aaPredicted RBP15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 UBE2OQ9C0C9 1292 aaKnown RBP15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 TUBE1Q9UJT0 475 aa15.97■□□□□ 0.15
SHKBP1-217ENST00000598558 DDX11L8A8MPP1 907 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 PITPNM1O00562 1244 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 NBNO60934 754 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 MED24O75448 989 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 C22orf31O95567 290 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 THPOP40225 353 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 QARSP47897 775 aaKnown RBP15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 NPEPPSP55786 919 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 PSMC5P62195 406 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 ATP2C1P98194 919 aaPredicted RBP15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 FPGSQ05932 587 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 BFSP2Q13515 415 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 SHHQ15465 462 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 ECM1Q16610 540 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 ZNF484Q5JVG2 852 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 TMEM240Q5SV17 173 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 PLA2G4FQ68DD2 849 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 CAGE1Q8TC20 777 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 DNAJB3Q8WWF6 145 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 NIFKQ9BYG3 293 aaKnown RBP15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 PCDHA2Q9Y5H9 948 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 CLIC4Q9Y696 253 aa15.96■□□□□ 0.15
SHKBP1-217ENST00000598558 LTBP2Q14767 1821 aa15.96■□□□□ 0.14
SHKBP1-217ENST00000598558 CEP290O15078 2479 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 PP2D1A8MPX8 630 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 CHRNA1P02708 482 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 HSP90AA1P07900 732 aaKnown RBP15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 SELPP16109 830 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 FXR2P51116 673 aaKnown RBP eCLIP15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 MKRN4PQ13434 485 aaPredicted RBP15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 XKR3Q5GH77 459 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 ZNF365Q70YC5 407 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 LRRC8DQ7L1W4 858 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 DEFB128Q7Z7B8 93 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 TPH2Q8IWU9 490 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 KIAA0319LQ8IZA0 1049 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 TMEM199Q8N511 208 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 LINC01465Q8N7H1 131 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 RETREG2Q8NC44 543 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 LXNQ9BS40 222 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 FAM49AQ9H0Q0 323 aaPredicted RBP15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 IL23AQ9NPF7 189 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 NRBP2Q9NSY0 501 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 ZDHHC9Q9Y397 364 aa15.95■□□□□ 0.14
SHKBP1-217ENST00000598558 CTSHP09668 335 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 CDC25AP30304 524 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 GRIN1Q05586 938 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 MGAT3Q09327 533 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 PTPAQ15257 358 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 SF3A1Q15459 793 aaKnown RBP15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 FAM26DQ5JW98 314 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 RPAINQ86UA6 219 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms