RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 C4orf19Q8IY42 314 aa22.82■■□□□ 1.24
PNKP-211ENST00000598020 IGSF22Q8N9C0 903 aa22.82■■□□□ 1.24
PNKP-211ENST00000598020 EIF2AK1Q9BQI3 630 aaKnown RBP22.82■■□□□ 1.24
PNKP-211ENST00000598020 NOC4LQ9BVI4 516 aaKnown RBP22.82■■□□□ 1.24
PNKP-211ENST00000598020 RAB34Q9BZG1 259 aa22.82■■□□□ 1.24
PNKP-211ENST00000598020 MYH15Q9Y2K3 1946 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 POTEMA6NI47 508 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 H0YGN5 161 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 TREHO43280 583 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 SLITRK3O94933 977 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 LYPLA2O95372 231 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 TIMP1P01033 207 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 ANP32AP39687 249 aaKnown RBP22.81■■□□□ 1.24
PNKP-211ENST00000598020 PRKCEQ02156 737 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 PTPAQ15257 358 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 IL17AQ16552 155 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 CKAP2LQ8IYA6 745 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 BANK1Q8NDB2 785 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 NIFKQ9BYG3 293 aaKnown RBP22.81■■□□□ 1.24
PNKP-211ENST00000598020 ZSWIM4Q9H7M6 989 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 PRDM5Q9NQX1 630 aaPredicted RBP22.81■■□□□ 1.24
PNKP-211ENST00000598020 ZMYND8Q9ULU4 1186 aaPredicted RBP22.81■■□□□ 1.24
PNKP-211ENST00000598020 STK24Q9Y6E0 443 aa22.81■■□□□ 1.24
PNKP-211ENST00000598020 ZBTB42B2RXF5 422 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 PITPNM1O00562 1244 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 CYP2C9P11712 490 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 DDIT3P35638 169 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 ERMNQ8TAM6 284 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 CAGE1Q8TC20 777 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 DHX38Q92620 1227 aaKnown RBP22.8■■□□□ 1.24
PNKP-211ENST00000598020 DYDC2Q96IM9 177 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 LXNQ9BS40 222 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 POLR3CQ9BUI4 534 aaPredicted RBP22.8■■□□□ 1.24
PNKP-211ENST00000598020 HIPK3Q9H422 1215 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 RGL1Q9NZL6 768 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 ZDHHC9Q9Y397 364 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 CLIC4Q9Y696 253 aa22.8■■□□□ 1.24
PNKP-211ENST00000598020 RAG1P15918 1043 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 SYN1P17600 705 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 ITGB8P26012 769 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 BFSP2Q13515 415 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 TRIM71Q2Q1W2 868 aaKnown RBP22.79■■□□□ 1.24
PNKP-211ENST00000598020 ATL3Q6DD88 541 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 TAF2Q6P1X5 1199 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 RPAINQ86UA6 219 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 CCDC155Q8N6L0 562 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 ZNF396Q96N95 335 aaPredicted RBP22.79■■□□□ 1.24
PNKP-211ENST00000598020 USP28Q96RU2 1077 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 TUFT1Q9NNX1 390 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 WRAP73Q9P2S5 460 aaPredicted RBP22.79■■□□□ 1.24
PNKP-211ENST00000598020 LRWD1Q9UFC0 647 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 TUBE1Q9UJT0 475 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 LTBP2Q14767 1821 aa22.79■■□□□ 1.24
PNKP-211ENST00000598020 SPATA31C1P0DKV0 1188 aa22.78■■□□□ 1.24
PNKP-211ENST00000598020 MUTP22033 750 aa22.78■■□□□ 1.24
PNKP-211ENST00000598020 RPA1P27694 616 aa22.78■■□□□ 1.24
PNKP-211ENST00000598020 NASPP49321 788 aaPredicted RBP22.78■■□□□ 1.24
PNKP-211ENST00000598020 TARBP2Q15633 366 aaKnown RBP22.78■■□□□ 1.24
PNKP-211ENST00000598020 PCDHA2Q9Y5H9 948 aa22.78■■□□□ 1.24
PNKP-211ENST00000598020 CAND2O75155 1236 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 RPLP2P05387 115 aaKnown RBP22.77■■□□□ 1.24
PNKP-211ENST00000598020 XRCC6P12956 609 aaKnown RBP eCLIP22.77■■□□□ 1.24
PNKP-211ENST00000598020 IGBP1P78318 339 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 CYP4A11Q02928 519 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 CTTNQ14247 550 aaKnown RBP22.77■■□□□ 1.24
PNKP-211ENST00000598020 SLC39A14Q15043 492 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 FOXD4L5Q5VV16 416 aaPredicted RBP22.77■■□□□ 1.24
PNKP-211ENST00000598020 HAUS3Q68CZ6 603 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 MTHFD1LQ6UB35 978 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 ANO5Q75V66 913 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 CATSPER3Q86XQ3 398 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 TPH2Q8IWU9 490 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 FOXD4L4Q8WXT5 416 aaPredicted RBP22.77■■□□□ 1.24
PNKP-211ENST00000598020 CEP89Q96ST8 783 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 FTOQ9C0B1 505 aaKnown RBP eCLIP22.77■■□□□ 1.24
PNKP-211ENST00000598020 PPME1Q9Y570 386 aa22.77■■□□□ 1.24
PNKP-211ENST00000598020 MAGEB2O15479 319 aa22.76■■□□□ 1.23
PNKP-211ENST00000598020 KLRC1P26715 233 aa22.76■■□□□ 1.23
PNKP-211ENST00000598020 MFSD5Q6N075 450 aa22.76■■□□□ 1.23
PNKP-211ENST00000598020 TRAPPC12Q8WVT3 735 aa22.76■■□□□ 1.23
PNKP-211ENST00000598020 WNT8BQ93098 351 aa22.76■■□□□ 1.23
PNKP-211ENST00000598020 AK8Q96MA6 479 aa22.76■■□□□ 1.23
PNKP-211ENST00000598020 SMIM35A0A1B0GVV1 85 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 VWA3AA6NCI4 1184 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 DDX11L8A8MPP1 907 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 MED24O75448 989 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 C22orf31O95567 290 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 CKBP12277 381 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 YWHABP31946 246 aaKnown RBP22.75■■□□□ 1.23
PNKP-211ENST00000598020 CYP2C18P33260 490 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 NUCB2P80303 420 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 OTUD6AQ7L8S5 288 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 TRMT1LQ7Z2T5 733 aaKnown RBP22.75■■□□□ 1.23
PNKP-211ENST00000598020 RETREG2Q8NC44 543 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 BADQ92934 168 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 LBHD1Q9BQE6 289 aaPredicted RBP22.75■■□□□ 1.23
PNKP-211ENST00000598020 PPP1R12CQ9BZL4 782 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 SEPT9Q9UHD8 586 aaPredicted RBP22.75■■□□□ 1.23
PNKP-211ENST00000598020 UMODL1Q5DID0 1318 aa22.75■■□□□ 1.23
PNKP-211ENST00000598020 EVPLQ92817 2033 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms